View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_28 (Length: 332)
Name: NF10273_high_28
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 27570783 - 27571080
Alignment:
| Q |
20 |
aattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacat |
119 |
Q |
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| T |
27570783 |
aattaggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacat |
27570882 |
T |
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| Q |
120 |
gtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattg |
219 |
Q |
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| T |
27570883 |
gtgagatgtcgagagcatgtctaccattggattagttataacaaaatgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattg |
27570982 |
T |
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| Q |
220 |
gttctcttcttgcctcctaacactgtttctgatctataattcaggtcctactcatgatttacaaattgcagatatatcagataatagttggctgatgt |
317 |
Q |
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| T |
27570983 |
gttctcttcttgcctcctaacactgcttctgatctataattcaggtcctactcatgatttacaaattgaagatatatcagataatagttggctgatgt |
27571080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 27419822 - 27419680
Alignment:
| Q |
24 |
aggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtga |
123 |
Q |
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| T |
27419822 |
aggtcctacacaacctt-ataagtttcacataaatatgatatatattcagttggtagatgtatatttgctgcaatgtcaattagaagaa---acatgtga |
27419727 |
T |
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| Q |
124 |
gatgtcgagagcatgtctaccattggattagttataacaaaatgcaa |
170 |
Q |
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| T |
27419726 |
gatgtctaaagcatgtctacaattggattatctatacccaaatgcaa |
27419680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 283
Target Start/End: Complemental strand, 27425332 - 27425216
Alignment:
| Q |
167 |
gcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtc |
266 |
Q |
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||||||||||||| ||||||| | || ||||||||||||| ||| |||||| |||||| | || ||||||||||||| |||||| |||||| ||||||| |
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| T |
27425332 |
gcaaaaatataaattgtggttcctggtggtttgtgatcttgtgttcaatatttgttctcgtttttcctcctaacactgcttctgaactataaatcaggtc |
27425233 |
T |
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| Q |
267 |
ctactcatgatttacaa |
283 |
Q |
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| T |
27425232 |
ctacgcaagctttacaa |
27425216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 27415055 - 27414960
Alignment:
| Q |
200 |
tgatcttgcgtttaatattggttctcttcttgcctcctaacactgtttctgatctataattcaggtcctactcatgatttacaaattgcagatatat |
296 |
Q |
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|||||||| ||| || |||||||||||| || |||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||| |||||| |
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| T |
27415055 |
tgatcttgtgttcaaaattggttctcttttt-cctcctcacactgtttctgagctataaatcaggtcctactcaagctttacaagttgcacatatat |
27414960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 27425237 - 27425100
Alignment:
| Q |
24 |
aggtcctacacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagctgcattgtcaattcgaagaaattacatgtga |
123 |
Q |
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||||||||| |||||||||||||| |||||||||| |||| ||| | | ||||| ||||||||||| | | ||||||||| ||||||| |||||| |
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| T |
27425237 |
aggtcctacgcaagctttacaagtggcacataaatatgatttattt--agctggtatatgtatattagtttccttgtcaattagaagaaag---atgtga |
27425143 |
T |
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| Q |
124 |
gatgtcgagagcatgtctaccattggattagttataacaaaat |
166 |
Q |
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|||||| | | |||||||||||||| ||||| |||| |||||| |
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| T |
27425142 |
gatgtctaaaccatgtctaccattgcattagctataccaaaat |
27425100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 27422726 - 27422645
Alignment:
| Q |
165 |
atgcaaaaatataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttcttgcctcctaacactgtt |
246 |
Q |
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|
|||||||||||||||| |||||||||||| | | || ||||| ||| ||||| ||||||||||| |||||| |||||||| |
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| T |
27422726 |
atgcaaaaatataaaatgtggttcatagtggctcatgttcttgtgttcaatatcggttctcttctctcctcctcacactgtt |
27422645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 27566577 - 27566634
Alignment:
| Q |
173 |
atataaaacgtggttcatagtcgtttgtgatcttgcgtttaatattggttctcttctt |
230 |
Q |
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| T |
27566577 |
atataaaatgtggtttatagtggtttgtgatcttgtgttctatattggttctcttctt |
27566634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 27422641 - 27422579
Alignment:
| Q |
31 |
acacaagctttacaagttgcacataaatctgatatatattcaaatggtagatgtatattagct |
93 |
Q |
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|||||||| | |||||||||||| |||||||| || |||| | ||||||||||||||||||| |
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| T |
27422641 |
acacaagcctaacaagttgcacacaaatctgagatgtatttagctggtagatgtatattagct |
27422579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 27412061 - 27412020
Alignment:
| Q |
118 |
atgtgagatgtcgagagcatgtctaccattggattagttata |
159 |
Q |
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|||||||||||| | |||||||||||||||||||||| |||| |
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| T |
27412061 |
atgtgagatgtctaaagcatgtctaccattggattagctata |
27412020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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