View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_30 (Length: 324)
Name: NF10273_high_30
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 1890795 - 1890495
Alignment:
| Q |
1 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1890795 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
1890696 |
T |
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| Q |
101 |
tccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaatttctgt |
200 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1890695 |
tccttgtaaaaggaccatcttcttctcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaatttctat |
1890596 |
T |
|
| Q |
201 |
gagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattatttaagaaactgttta |
300 |
Q |
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| T |
1890595 |
gagatgtttttcatgatgaggtttggaccataaactgaaatgaaagataaaagttggttggttgtattaaaagttggtatattatttaagaaactgttta |
1890496 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
1890495 |
t |
1890495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1895645 - 1895517
Alignment:
| Q |
1 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
100 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
1895645 |
gacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattggcaaaaca |
1895546 |
T |
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| Q |
101 |
tccttgtaaaatgaccatcttcttgtcat |
129 |
Q |
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| T |
1895545 |
tccatgtaaaaggaccatcttcttgtcat |
1895517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 1911101 - 1910928
Alignment:
| Q |
1 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| | | ||| ||||| ||||||||| |||| |
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| T |
1911101 |
gacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaaca |
1911002 |
T |
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| Q |
101 |
tccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaa |
175 |
Q |
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||| |||| || ||||||||||||||||| ||||| | ||||||| ||||| |||||||||||||||||||||| |
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| T |
1911001 |
tccatgtacaaggaccatcttcttgtcat-gtttctgtcacttctatgttctttcagttacacaacaatcacaaa |
1910928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1902056 - 1901928
Alignment:
| Q |
1 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
100 |
Q |
| |
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|||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| ||||||||||||||||||||| |
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| T |
1902056 |
gacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtggcaaaaca |
1901957 |
T |
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| Q |
101 |
tccttgtaaaatgaccatcttcttgtcat |
129 |
Q |
| |
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||| |||||| |||||||||||||||||| |
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| T |
1901956 |
tccatgtaaagtgaccatcttcttgtcat |
1901928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1884151 - 1883959
Alignment:
| Q |
1 |
gacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcaccacaggtggcaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||| | ||||| ||||| |||||||||| || | |
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| T |
1884151 |
gacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcacaacaggtggcagaaaa |
1884052 |
T |
|
| Q |
101 |
tccttgtaaaatgaccatcttcttgtcatattttctctgacttctaagttctatcagttacacaacaatcacaaattctgctgaagttcagaat |
194 |
Q |
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||| ||||||| |||| | |||||||||| ||||| || ||||||||| |||| || |||||||||||||| || ||||||||||||| |
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| T |
1884051 |
tccatgtaaaaggaccgttttcttgtcat-ctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaagttcagaat |
1883959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 1878132 - 1878084
Alignment:
| Q |
8 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
56 |
Q |
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|||||||||||||||||||||||||||||| | ||| ||| |||||||| |
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| T |
1878132 |
ttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
1878084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
8 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
57 |
Q |
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|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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