View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_32 (Length: 320)
Name: NF10273_high_32
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 43802803 - 43803092
Alignment:
| Q |
21 |
agtcttagatcagcattctgtaattaaagcttgaaaatcatctaaattagatcagcatt-atagatgtcttaactgctcaatcaaaattaaactttatgc |
119 |
Q |
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| T |
43802803 |
agtcttagatcatcattctgtaataaaagcttgaaaatcgtctaaattagatcagcatttatagatgtcttaactgctcaatcataattaaactttatgc |
43802902 |
T |
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| Q |
120 |
cctgaccnnnnnnnnnnnnnnttaaacttcatgatattcaactctacaaagatatttaattatttgtcaaaagaaagatatttaattatttaccaaatta |
219 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802903 |
cctgaccaaaaaaaaaaaaa-ttaaactttatgatattcaactctacaaagatatttaattatttgtcaaaagaaagatatttaattatttaccaaatta |
43803001 |
T |
|
| Q |
220 |
atacaaacactagagaataatattacctattgtgtaattgaattctcgttttatatttatgcaattgagtttattatcatttagccttcat |
310 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43803002 |
atacaaacactagagaataatattacctattgtgtgattgaattctcgttttatatttatgcaattgagtttattatcatttagccttcat |
43803092 |
T |
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