View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_38 (Length: 274)
Name: NF10273_high_38
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 13351826 - 13352072
Alignment:
| Q |
18 |
cttcaaaaataaagttatcattcttcagaaaatcacgggcgaagaacagcctgcagagttggatatgctcaaaaaagtctcgttttgggtaaggatttat |
117 |
Q |
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| T |
13351826 |
cttcaaaaataaagttatcattcttcagaaaatcacgggcgaagaacagcctgcagagttggatatgctcaaaaaagtctcgttttgggtaaggatttat |
13351925 |
T |
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| Q |
118 |
gaactgccattaaaattgcgttcagattcgattgcgaaaaagattggagacttaattggagtacatgaagaaacggatcagcgggacgtttacagaatgg |
217 |
Q |
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| T |
13351926 |
gaactgccattgaaattgcgttcagattcgattgcgaaaaagattggagacttaattggagtacatgaagaaacggatcagcgtgacgtttacagaatgg |
13352025 |
T |
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| Q |
218 |
ggaagtttcttcggatcagggttttactggatttgaataggcctttg |
264 |
Q |
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| T |
13352026 |
ggaggtttcttcggatcagggttttactggatttgaataggcctttg |
13352072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 13350966 - 13351180
Alignment:
| Q |
19 |
ttcaaaaataaagttatcattcttcagaaaatcacgggcgaagaacagcctgcagagttggatatgctcaaaaaagtctcgttttgggtaaggatttatg |
118 |
Q |
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| T |
13350966 |
ttcaaaaataatgttatcattcttcagaaaatcactggcaaagaacagcctgtagagttggataatatgcataagatgtcgttttgggttaggatctatg |
13351065 |
T |
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| Q |
119 |
aactgccattaaaattgcgttcagattcgattgcgaaaaagattggagacttaattggagtacatgaagaaacggatcagcgggacgtttacagaatggg |
218 |
Q |
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| T |
13351066 |
agttgccatttaaattgcgttcggattcgatcgcgaaaaagattggagatgttattggggtttatgaagaaactgatcaacaagatgtttacagaatggg |
13351165 |
T |
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| Q |
219 |
gaagtttcttcggat |
233 |
Q |
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| T |
13351166 |
gaggtttcttcggat |
13351180 |
T |
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