View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10273_high_4 (Length: 596)
Name: NF10273_high_4
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 578
Target Start/End: Original strand, 17576274 - 17576853
Alignment:
| Q |
12 |
tagcataggacaggataaggactagcataaaaacttgatagtataaggcttgacataatttaaataatgcaatagttatgaagaaaaataaaccccgaag |
111 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17576274 |
tagcataggacaggataaggactagtataaaaacttgatagtataaggcttgacataatttaaataatgcaatagttatgaagaaaaataaaccccgaag |
17576373 |
T |
|
| Q |
112 |
taaggtgggggatatcatcctttccatttccctttccccaaagccctcccttcccttttgct------------acaaagcctaaattgggccctccacg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17576374 |
taaggtgggggatatcatcctttccatttccctttccccaaagccctcccttcccttttgctcctaattctcaaacaaagcctaaattgggccctccacg |
17576473 |
T |
|
| Q |
200 |
ttaaagaagtggactcaactctaactctagtacatggcaaggtcacatgaagattctgtggactcaactctatctctagtacaggacaaggtcacatgaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17576474 |
ttaaagaagtggactcaactctaactctagtgcatggcaaggtcacatgaaaattctgtggactcaactctatctctagtacaggacaaggtcacatgaa |
17576573 |
T |
|
| Q |
300 |
agttatgtgtatgtatcacatacattaagtaagttggaccaatgtttggatcctctagagtagtttctctcttaatttattgttcccaaaacctg-aaca |
398 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| | | ||| |||| |
|
|
| T |
17576574 |
agttatgtgtatgtgtcacatacattaagtaagttggaccaatgtttggatcctctagtgtagtttctctcttaatttaatggtccctacaactgcaaca |
17576673 |
T |
|
| Q |
399 |
ccatactgcaaatgtagaggataaatgtccagtcggaccatattaaactttttaaatgtgcatgtagaacaagataataatgagattcacacttcataan |
498 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17576674 |
ccatactgcaaatgtagaggataaaagtccagtcggaccatattaaactttttaaatgtgcatgtagaacaagataataatgagattcacacttcataat |
17576773 |
T |
|
| Q |
499 |
nnnnnncacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgagttttaat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17576774 |
ttttttcacataatcatactatgtgaaaaatctaatatgaatgggtccatttccattcaagctgttctttgagttttaat |
17576853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University