View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_42 (Length: 267)
Name: NF10273_high_42
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_42 |
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| [»] scaffold0101 (4 HSPs) |
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Alignment Details
Target: scaffold0101 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: scaffold0101
Description:
Target: scaffold0101; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 32539 - 32692
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttgacaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgccttcc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32539 |
tttaacagatatcaccaaatcaaatccatgcttagtttgacaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgccttcc |
32638 |
T |
|
| Q |
197 |
aatcaaatcaaaattattaagaacttattacagaaatttgatttatctagatgg |
250 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32639 |
aatcaaatcacaattattaagaacttattaaagaaatttgatttatctagatgg |
32692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 21947 - 22055
Alignment:
| Q |
112 |
caaatcaaatccatgcttagtttgacaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgccttccaatcaaatcaaaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |
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| T |
21947 |
caaatcaaatccatgcttagtttgacaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtattccttccaataaaactaaaata |
22046 |
T |
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| Q |
212 |
attaagaac |
220 |
Q |
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||||||||| |
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|
| T |
22047 |
attaagaac |
22055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 32469 - 32520
Alignment:
| Q |
16 |
agatcaccaaaatcaacaaatattaacttactcaattcaatacataaagaaa |
67 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
32469 |
agatcaccaaaatcaacaaatattaacttatttaattcaatacataaagaaa |
32520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0101; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 23524 - 23559
Alignment:
| Q |
168 |
atgttcaaaattcaatttgtatgccttccaatcaaa |
203 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
23524 |
atgttcaaaattcaatttgtatgccttgcaatcaaa |
23559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 17258523 - 17258673
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttgacaaaccaccacactgcagattaa-ttaagaacatgttcaaaattcaatttgtatgccttc |
195 |
Q |
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||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||| |
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| T |
17258523 |
tttaacagacatcaccaaatcagatccacgcttagtttgacaaaccaccacgctgcagaataaattaagaacatgtttaaaattcaatttgtatgccttc |
17258622 |
T |
|
| Q |
196 |
caatcaaatcaaaattattaagaacttattacagaaatttgatttatctag |
246 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17258623 |
caatcaaatcaaaattattaagaacttattaaagaaatttgatttatctag |
17258673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 42376489 - 42376640
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttgacaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgccttcc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||| | |
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| T |
42376489 |
tttaacagatatcaccaaatcaaatccatgcttagtttgaccaaccaccacgctgcagaataattaagaacatgctcaaaattcaatttgtgtgccttac |
42376588 |
T |
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| Q |
197 |
aatcaaatcaaaattattaagaac---ttattacagaaatttgatttatcta |
245 |
Q |
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|||||||| ||||||||||| ||| | |||| |||||||||||||||||| |
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| T |
42376589 |
aatcaaattaaaattattaaaaacacttcattaaagaaatttgatttatcta |
42376640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 17334221 - 17334342
Alignment:
| Q |
126 |
gcttagtttgacaaaccaccacactgcagattaa-ttaagaacatgttcaaaattcaatttgtatgccttccaatcaaatcaaaattattaagaacttat |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17334221 |
gcttagtttgacaaaccaccacgctgcagaataaattaagaacatgtttaaaattcaatttgtatgccttccaatcaaatcaaaattattaagaacctaa |
17334320 |
T |
|
| Q |
225 |
tacagaaatttgatttatctag |
246 |
Q |
| |
|
|| ||||||||||||||||||| |
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| T |
17334321 |
taaagaaatttgatttatctag |
17334342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 17237961 - 17238087
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttg---acaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgcct |
193 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || | ||||||| ||||||| |||||||||| |||||||| |||||| |||||||| | |
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| T |
17237961 |
tttaacagacatcaccaaatcaaatccatgcttagtttgcaaactacccaccacgctgcagaataattaagaatatgttcaatattcaaattgtatgctt |
17238060 |
T |
|
| Q |
194 |
tccaatcaaatcaaaattattaagaac |
220 |
Q |
| |
|
||||||||||| ||||| ||||||||| |
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| T |
17238061 |
tccaatcaaattaaaataattaagaac |
17238087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 246
Target Start/End: Original strand, 17236522 - 17236680
Alignment:
| Q |
99 |
taacagatatcaccaaatcaaatccatgcttagtttgacaaa--------ccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
17236522 |
taacagatatcaccaaatcaaatccatgcttagtttgacaaaccaccagtccaccaaactgcagaataattaagaacatattcaaaattcaatttgtatt |
17236621 |
T |
|
| Q |
191 |
ccttccaatcaaatcaaaattattaag---aacttattacagaaatttgatttatctag |
246 |
Q |
| |
|
|||||||| |||| ||||| | |||| ||||||||| |||||||| || ||||||| |
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| T |
17236622 |
tcttccaataaaattaaaataactaagaacaacttattaaagaaattttatgtatctag |
17236680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 245
Target Start/End: Original strand, 17255747 - 17255898
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttg---acaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgcct |
193 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || | ||||||| ||||||| |||||||||| |||||||| |||||| |||||||| | |
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|
| T |
17255747 |
tttaacagacatcaccaaatcaaatccatgcttagtttgcaaactacccaccacgctgcagaataattaagaatatgttcaatattcaaattgtatgctt |
17255846 |
T |
|
| Q |
194 |
tccaatcaaatcaaaattattaagaacttattacagaaatttgatttatcta |
245 |
Q |
| |
|
||||||||||| ||||| ||||| | | || |||||||||||||||||| |
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|
| T |
17255847 |
tccaatcaaattaaaataattaattatcaactaaagaaatttgatttatcta |
17255898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 17311012 - 17311082
Alignment:
| Q |
181 |
aatttgtatgccttccaatcaaatcaaaa-----ttattaagaacttattacagaaatttgatttatctag |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
17311012 |
aatttgtatgccttccaatcaaatcaaaataaaattattaagaacttattaaagaaatttgatttatctag |
17311082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 17244232 - 17244355
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgc-ttagtttg---acaaaccaccacactgcagattaattaagaacatgttcaaaattcaatttgtatgcc |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| || | ||||||| ||||||| |||||||| |||||||| |||||| ||||||| |
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|
| T |
17244232 |
tttaacagacatcaccaaatcaaatccatgctttagtttgcaaaccacccaccacgctgcagaataattaag---atgttcaatattcaa-ttgtatgtt |
17244327 |
T |
|
| Q |
193 |
ttccaatcaaatcaaaattattaagaac |
220 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |
|
|
| T |
17244328 |
ttccaatcaaattaaaataattaagaac |
17244355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 17241165 - 17241205
Alignment:
| Q |
97 |
tttaacagatatcaccaaatcaaatccatgcttagtttgac |
137 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
17241165 |
tttaacagacatcaccaaatcaaatccacgcttagtttgac |
17241205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 17299108 - 17299140
Alignment:
| Q |
170 |
gttcaaaattcaatttgtatgccttccaatcaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17299108 |
gttcaaaattcaatttgtatgccttccaatcaa |
17299140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 17234002 - 17234038
Alignment:
| Q |
165 |
aacatgttcaaaattcaatttgtatgccttccaatca |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |
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|
| T |
17234002 |
aacatgttaaaaattcaatttgtatgccttgcaatca |
17234038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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