View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_high_44 (Length: 254)

Name: NF10273_high_44
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_high_44
NF10273_high_44
[»] chr2 (4 HSPs)
chr2 (45-154)||(36911133-36911248)
chr2 (158-221)||(36911278-36911341)
chr2 (164-221)||(10862990-10863047)
chr2 (173-221)||(9792256-9792304)
[»] chr3 (4 HSPs)
chr3 (164-221)||(27065296-27065353)
chr3 (164-211)||(30991654-30991701)
chr3 (164-211)||(93416-93463)
chr3 (156-211)||(27079878-27079934)
[»] chr5 (4 HSPs)
chr5 (156-211)||(39058076-39058132)
chr5 (164-211)||(14148947-14148994)
chr5 (164-211)||(18014437-18014484)
chr5 (164-221)||(26637605-26637662)
[»] chr8 (4 HSPs)
chr8 (164-211)||(3469214-3469261)
chr8 (164-206)||(42906859-42906901)
chr8 (172-217)||(34347447-34347492)
chr8 (164-211)||(30805978-30806025)
[»] chr4 (5 HSPs)
chr4 (164-211)||(15478212-15478259)
chr4 (164-211)||(24831085-24831132)
chr4 (165-211)||(23996409-23996455)
chr4 (164-221)||(13385756-13385813)
chr4 (165-221)||(40491804-40491860)
[»] chr1 (6 HSPs)
chr1 (164-211)||(27055720-27055767)
chr1 (164-211)||(35760457-35760504)
chr1 (164-211)||(46835213-46835260)
chr1 (167-211)||(46435418-46435462)
chr1 (164-211)||(3979689-3979736)
chr1 (169-218)||(26213955-26214004)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-221)||(452904-452961)
[»] chr7 (2 HSPs)
chr7 (164-211)||(2658563-2658610)
chr7 (164-221)||(9158792-9158849)
[»] scaffold0538 (2 HSPs)
scaffold0538 (156-221)||(8500-8566)
scaffold0538 (164-221)||(4035-4092)
[»] chr6 (3 HSPs)
chr6 (164-206)||(24081675-24081717)
chr6 (164-221)||(33483551-33483608)
chr6 (156-203)||(18053620-18053668)
[»] scaffold0193 (1 HSPs)
scaffold0193 (166-211)||(22897-22942)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 36911133 - 36911248
Alignment:
Q  45 tcccaagaattaaattattgaccaaacactt------atatttacccggtaataaggtttccacttttatgttcctaggaaagttaatcccaggaataaa 138  Q
    ||||||||||||||||||||||||||||| |      ||||||  |  ||||||||||||||||||||||||||||  ||||||||||||||| ||||||    
T  36911133 tcccaagaattaaattattgaccaaacacctttttctatatttttcttgtaataaggtttccacttttatgttcctccgaaagttaatcccagaaataaa 36911232  T
Q  139 ttgtgtatcctgcaaa 154  Q
    |||| |||||||||||    
T  36911233 ttgtatatcctgcaaa 36911248  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 36911278 - 36911341
Alignment:
Q  158 cttacaccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||    
T  36911278 cttacagcacttgattatatacactcatttttataaattttatcaaattttttacactcacctc 36911341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 10863047 - 10862990
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| |||| |||||||||    
T  10863047 ccacttgattatgtacactcatttttataaattttatcaaattgtttacactcacctc 10862990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 9792304 - 9792256
Alignment:
Q  173 tatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||| ||||||||||||||||| ||||| |||| || ||||||    
T  9792304 tatatacactcatttttataaattttatcaaattgtttacacccacctc 9792256  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 27065296 - 27065353
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||    
T  27065296 ccacttgattatatacactcatttttataaattttatcaaattgtttacactcacctc 27065353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 30991654 - 30991701
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  30991654 ccacttgattatatacactcatttttataaattttatcaaattgttta 30991701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 93416 - 93463
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  93416 ccacttgattatctacactcatttttataaattttatcaaattattta 93463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 27079878 - 27079934
Alignment:
Q  156 aacttacacc-acttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||| |||| ||||| ||||||||||||||||| |||||| ||||| ||||    
T  27079878 aacttacacccacttaattatttacacttatttttataagttttatcaaattgttta 27079934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 39058132 - 39058076
Alignment:
Q  156 aacttacacc-acttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  39058132 aacttacacccacttgattatatacactcatttttataaattttatcaaattgttta 39058076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 14148947 - 14148994
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  14148947 ccacttgattatatacactcatttttataaattttatcaaattgttta 14148994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 18014484 - 18014437
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  18014484 ccacttgattatatacatttatttttataaattttatcaaattgttta 18014437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 26637662 - 26637605
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||||| || ||| ||||||||||||||||  ||||| |||| |||||||||    
T  26637662 ccacttgattatttatactcatttttataaattttaacaaattgtttacactcacctc 26637605  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 3469261 - 3469214
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  3469261 ccacttgattatatacactcatttttataaattttatcaaattgttta 3469214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 42906859 - 42906901
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaatt 206  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  42906859 ccacttgattatatacactcatttttataaattttatcaaatt 42906901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 34347447 - 34347492
Alignment:
Q  172 ttatatacacttatttttataaattttattaaattctttatactca 217  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||    
T  34347447 ttatatacacttatttttataaattttatcaaattgtttaaactca 34347492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 30805978 - 30806025
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| ||||    
T  30805978 ccacttgattatttacactcatttttataaattttatcaaattattta 30806025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 15478259 - 15478212
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  15478259 ccacttgattatgtacactcatttttataaattttataaaattcttta 15478212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 24831132 - 24831085
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  24831132 ccacttgattatatacactcatttttataaatttgattaaattgttta 24831085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 23996409 - 23996455
Alignment:
Q  165 cacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  23996409 cacttgattatatacactcatttttataaattttatcaaattgttta 23996455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 13385756 - 13385813
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||||| |||||| || ||||||| |||||| ||||| |||| |||||||||    
T  13385756 ccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctc 13385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 40491860 - 40491804
Alignment:
Q  165 cacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    ||||||||||| || ||  |||||||||||||| |||||||| |||| |||||||||    
T  40491860 cacttgattatttatacacatttttataaatttaattaaattgtttacactcacctc 40491804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 27055720 - 27055767
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  27055720 ccacttgattatatacactcatttttataaattttatcaaattgttta 27055767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 35760504 - 35760457
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  35760504 ccacttgattatatacactcatttttataaattttatcaaattgttta 35760457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 46835260 - 46835213
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  46835260 ccacttgattatatacactcatttttataaattttatcaaattgttta 46835213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 46435462 - 46435418
Alignment:
Q  167 cttgattatatacacttatttttataaattttattaaattcttta 211  Q
    |||||||||||||||| ||||||||||||||||| ||||| ||||    
T  46435462 cttgattatatacactcatttttataaattttatcaaattgttta 46435418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 3979689 - 3979736
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||| ||||    
T  3979689 ccacttggttatatacactcatttttataaattttatcaaattgttta 3979736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 26213955 - 26214004
Alignment:
Q  169 tgattatatacacttatttttataaattttattaaattctttatactcac 218  Q
    ||||||| ||||||||||||||||| |||||| ||||| |||| ||||||    
T  26213955 tgattatttacacttatttttataatttttatcaaattgtttacactcac 26214004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 452961 - 452904
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||| |||| || ||||||    
T  452961 ccacttgattatataaactcatttttataaattttatcaaattgtttacacccacctc 452904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 2658610 - 2658563
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||| ||||    
T  2658610 ccacttgattatatacactcattttaataaattttatcaaattgttta 2658563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 9158849 - 9158792
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    ||||||||||||||||||  |||||||||| |||||| |||||  ||| |||||||||    
T  9158849 ccacttgattatatacacccatttttataacttttatcaaattgcttacactcacctc 9158792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 8566 - 8500
Alignment:
Q  156 aacttacacc-acttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||| |||||||||| |||||| || ||||||| |||||| ||||| |||| |||||||||    
T  8566 aacttacacccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctc 8500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0538; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 4092 - 4035
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||||||||| |||||| || ||||||| |||||| ||||| |||| |||||||||    
T  4092 ccacttgattatttacactcatgtttataagttttatcaaattgtttacactcacctc 4035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 24081675 - 24081717
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaatt 206  Q
    ||||||||||||||||||| |||||||| |||||||| |||||    
T  24081675 ccacttgattatatacactcatttttatcaattttatcaaatt 24081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 33483608 - 33483551
Alignment:
Q  164 ccacttgattatatacacttatttttataaattttattaaattctttatactcacctc 221  Q
    |||||| |||||||||||| | ||||||||||||||| ||||| |||| || ||||||    
T  33483608 ccacttcattatatacactaaattttataaattttatcaaattgtttacacccacctc 33483551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 18053668 - 18053620
Alignment:
Q  156 aacttaca-ccacttgattatatacacttatttttataaattttattaa 203  Q
    |||||||| |||||||||||| |||||| |||||||||||| |||||||    
T  18053668 aacttacatccacttgattatttacactcatttttataaatattattaa 18053620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 22897 - 22942
Alignment:
Q  166 acttgattatatacacttatttttataaattttattaaattcttta 211  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||||    
T  22897 acttgattatatacaatcatttttataaattttatcaaattgttta 22942  T

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