View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_high_47 (Length: 252)

Name: NF10273_high_47
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_high_47
NF10273_high_47
[»] chr8 (29 HSPs)
chr8 (27-237)||(12637532-12637742)
chr8 (18-237)||(28005485-28005700)
chr8 (18-237)||(28062788-28063003)
chr8 (29-225)||(28006374-28006565)
chr8 (29-225)||(28063677-28063868)
chr8 (14-128)||(24199161-24199275)
chr8 (12-237)||(9626201-9626442)
chr8 (60-237)||(31074136-31074329)
chr8 (15-148)||(28525004-28525137)
chr8 (21-127)||(31075077-31075183)
chr8 (136-237)||(39138544-39138645)
chr8 (137-236)||(28526425-28526524)
chr8 (137-218)||(41754687-41754768)
chr8 (136-236)||(31075171-31075270)
chr8 (26-127)||(9625421-9625522)
chr8 (136-237)||(28524900-28525001)
chr8 (62-134)||(28526372-28526443)
chr8 (136-236)||(33315001-33315101)
chr8 (136-220)||(41754127-41754211)
chr8 (136-208)||(32898345-32898417)
chr8 (138-208)||(1952872-1952942)
chr8 (19-120)||(36032944-36033045)
chr8 (136-236)||(9625333-9625433)
chr8 (152-232)||(24199077-24199157)
chr8 (136-208)||(41121276-41121348)
chr8 (138-208)||(35178707-35178777)
chr8 (138-224)||(45476317-45476403)
chr8 (110-139)||(28619427-28619456)
chr8 (138-202)||(30134743-30134807)
[»] chr1 (22 HSPs)
chr1 (41-235)||(8975303-8975498)
chr1 (28-231)||(11060557-11060759)
chr1 (18-235)||(50106949-50107182)
chr1 (18-236)||(11059759-11059977)
chr1 (42-149)||(1407874-1407980)
chr1 (98-233)||(29766069-29766199)
chr1 (136-222)||(6612567-6612653)
chr1 (137-236)||(44720728-44720829)
chr1 (136-207)||(11830061-11830132)
chr1 (18-149)||(44719596-44719727)
chr1 (136-218)||(534428-534510)
chr1 (138-208)||(7945456-7945526)
chr1 (138-208)||(9340927-9340997)
chr1 (195-237)||(33342558-33342600)
chr1 (136-237)||(25038023-25038124)
chr1 (136-237)||(25043235-25043336)
chr1 (136-204)||(1001326-1001394)
chr1 (136-208)||(9339797-9339869)
chr1 (152-205)||(1407802-1407855)
chr1 (136-208)||(32665669-32665742)
chr1 (136-208)||(3117820-3117892)
chr1 (136-208)||(51450171-51450243)
[»] chr2 (44 HSPs)
chr2 (32-231)||(26586071-26586270)
chr2 (18-237)||(12745967-12746182)
chr2 (41-236)||(37607245-37607435)
chr2 (19-150)||(18675328-18675459)
chr2 (31-128)||(14887294-14887391)
chr2 (48-237)||(34582446-34582651)
chr2 (136-226)||(26585229-26585318)
chr2 (136-237)||(14887378-14887479)
chr2 (18-134)||(18676606-18676722)
chr2 (17-127)||(38854289-38854399)
chr2 (18-134)||(26585299-26585415)
chr2 (140-236)||(38853898-38853994)
chr2 (48-150)||(38854001-38854100)
chr2 (136-226)||(14886610-14886700)
chr2 (18-127)||(14886688-14886796)
chr2 (97-150)||(38855035-38855088)
chr2 (138-237)||(21733653-21733752)
chr2 (177-232)||(38854601-38854656)
chr2 (48-127)||(38856018-38856097)
chr2 (138-208)||(39015156-39015226)
chr2 (138-208)||(40000237-40000307)
chr2 (171-232)||(12003714-12003775)
chr2 (152-237)||(18675226-18675310)
chr2 (136-237)||(34037553-34037654)
chr2 (140-225)||(38854943-38855028)
chr2 (136-208)||(14704156-14704228)
chr2 (136-208)||(17330119-17330191)
chr2 (136-208)||(24458211-24458283)
chr2 (136-208)||(32765088-32765160)
chr2 (136-208)||(43380738-43380810)
chr2 (136-227)||(31442483-31442574)
chr2 (138-208)||(31091429-31091499)
chr2 (180-237)||(38856291-38856348)
chr2 (138-208)||(24459356-24459426)
chr2 (137-207)||(31443126-31443196)
chr2 (138-208)||(39016285-39016355)
chr2 (159-208)||(17466212-17466261)
chr2 (137-226)||(18676704-18676793)
chr2 (110-138)||(2910300-2910328)
chr2 (152-204)||(7073805-7073857)
chr2 (136-208)||(7412263-7412335)
chr2 (110-138)||(14704205-14704233)
chr2 (136-200)||(21732274-21732338)
chr2 (136-208)||(43381071-43381143)
[»] chr4 (13 HSPs)
chr4 (36-237)||(2786365-2786566)
chr4 (26-227)||(21622893-21623088)
chr4 (43-237)||(24745846-24746056)
chr4 (100-230)||(32244423-32244548)
chr4 (29-237)||(24753332-24753542)
chr4 (136-208)||(19050407-19050479)
chr4 (29-150)||(21622068-21622190)
chr4 (171-236)||(32244603-32244668)
chr4 (136-208)||(42278200-42278272)
chr4 (136-226)||(6039274-6039364)
chr4 (136-208)||(47874714-47874786)
chr4 (138-208)||(47878386-47878456)
chr4 (138-208)||(20599788-20599858)
[»] chr7 (34 HSPs)
chr7 (18-237)||(24288629-24288847)
chr7 (19-134)||(25621502-25621617)
chr7 (33-121)||(329990-330078)
chr7 (48-149)||(8870225-8870326)
chr7 (131-224)||(24287635-24287728)
chr7 (170-237)||(27067924-27067991)
chr7 (170-237)||(27210322-27210389)
chr7 (138-208)||(7258426-7258496)
chr7 (138-208)||(10898975-10899045)
chr7 (135-208)||(8048663-8048736)
chr7 (171-232)||(30917859-30917920)
chr7 (89-149)||(8870844-8870904)
chr7 (57-127)||(8878768-8878836)
chr7 (52-127)||(27068004-27068079)
chr7 (52-127)||(27210234-27210309)
chr7 (138-208)||(44333288-44333358)
chr7 (138-208)||(48788574-48788644)
chr7 (136-208)||(30924909-30924981)
chr7 (152-208)||(42477531-42477587)
chr7 (136-208)||(48777408-48777479)
chr7 (136-207)||(385529-385600)
chr7 (191-222)||(13578265-13578296)
chr7 (136-202)||(34707777-34707843)
chr7 (138-208)||(35727849-35727919)
chr7 (170-232)||(39824276-39824338)
chr7 (138-208)||(48647345-48647415)
chr7 (136-208)||(7259585-7259656)
chr7 (136-208)||(12223579-12223651)
chr7 (136-208)||(33607394-33607466)
chr7 (136-208)||(42478170-42478241)
chr7 (136-208)||(43457619-43457690)
chr7 (136-208)||(43461617-43461689)
chr7 (110-138)||(44334345-44334373)
chr7 (136-208)||(44334350-44334422)
[»] chr5 (24 HSPs)
chr5 (18-167)||(23773330-23773479)
chr5 (171-235)||(32555461-32555525)
chr5 (14-127)||(28865045-28865158)
chr5 (136-208)||(2464820-2464892)
chr5 (138-204)||(32640443-32640509)
chr5 (136-236)||(34173403-34173503)
chr5 (28-149)||(35538062-35538179)
chr5 (138-208)||(545938-546008)
chr5 (138-208)||(8074601-8074671)
chr5 (196-230)||(23773477-23773511)
chr5 (138-208)||(25590581-25590651)
chr5 (138-208)||(40611411-40611481)
chr5 (136-224)||(13651041-13651134)
chr5 (152-208)||(28591029-28591085)
chr5 (171-226)||(35538216-35538271)
chr5 (138-208)||(4593012-4593081)
chr5 (138-208)||(8075735-8075805)
chr5 (138-208)||(14889920-14889990)
chr5 (170-224)||(21069444-21069498)
chr5 (135-189)||(31946932-31946986)
chr5 (138-208)||(40612561-40612631)
chr5 (171-208)||(544799-544836)
chr5 (136-208)||(9537193-9537265)
chr5 (156-220)||(19186129-19186193)
[»] chr3 (19 HSPs)
chr3 (29-139)||(29188185-29188295)
chr3 (136-237)||(36827355-36827456)
chr3 (138-208)||(55389371-55389441)
chr3 (137-208)||(2591776-2591847)
chr3 (136-208)||(48574359-48574431)
chr3 (136-207)||(55388211-55388282)
chr3 (138-208)||(48573136-48573206)
chr3 (138-208)||(48808523-48808593)
chr3 (139-208)||(17700670-17700739)
chr3 (152-208)||(36279103-36279159)
chr3 (136-237)||(3671180-3671274)
chr3 (170-208)||(6986845-6986883)
chr3 (136-202)||(45600859-45600925)
chr3 (138-208)||(48809557-48809627)
chr3 (136-205)||(20464243-20464312)
chr3 (143-232)||(40206029-40206118)
chr3 (136-208)||(52318217-52318289)
chr3 (136-208)||(53957824-53957896)
chr3 (110-138)||(53957873-53957901)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-127)||(142488-142596)
[»] chr6 (4 HSPs)
chr6 (136-220)||(30748149-30748233)
chr6 (137-236)||(29856887-29856987)
chr6 (156-236)||(19600144-19600224)
chr6 (138-207)||(6468733-6468801)
[»] scaffold0237 (1 HSPs)
scaffold0237 (137-236)||(3089-3189)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 12637532 - 12637742
Alignment:
Q  27 acaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattt 126  Q
    ||||||||||  | ||||||||||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  12637532 acaagtctcctacaaccacataacatcttcattgaggaacatgaccaagtttttgacgaagagcaacacttcgttggaacgagtttagggatattgattt 12637631  T
Q  127 ttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    |  ||| | || || ||||||||  |||| |||||||||||  ||| ||||| |||||||||| ||| |||||||| |||||||| |||| || ||||||    
T  12637632 tcagtttagggttaatgattttcagttcagggaccaaagtgatcatattctactttcactttagtccatgtgacacatcatactccttgttagtataaaa 12637731  T
Q  227 cctttgtcaca 237  Q
    |||||| ||||    
T  12637732 cctttgccaca 12637742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 28005700 - 28005485
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||  |||| ||||||||||| || |||||||||| |||||||||||||    
T  28005700 gacctaaaagcaagtctcccgcaaccacataacaacttcattgaggaagatgacttagttcttgacgaagaggaacacttcgttggaacgagtttgggga 28005601  T
Q  118 tattgatttttggttcatggatattgattttcgcttcaaggaccaaagtgg-acattttctattttcactttaatccctgtgacacctcatactctttgt 216  Q
    |||||||||| ||      |||||| ||||| | |||| |||||||||||| | ||||| || |||||||||| ||| | |||||||| |||||||||||    
T  28005600 tattgattttcgg-----agatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgt 28005506  T
Q  217 cagcataaaacctttgtcaca 237  Q
     || ||||||| |||| ||||    
T  28005505 tagtataaaacttttgccaca 28005485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 28063003 - 28062788
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||  |||| ||||||||||| || |||||||||| |||||||||||||    
T  28063003 gacctaaaagcaagtctcccgcaaccacataacaacttcattgaggaagatgacttagttcttgacgaagaggaacacttcgttggaacgagtttgggga 28062904  T
Q  118 tattgatttttggttcatggatattgattttcgcttcaaggaccaaagtgg-acattttctattttcactttaatccctgtgacacctcatactctttgt 216  Q
    |||||||||| ||      |||||| ||||| | |||| |||||||||||| | ||||| || |||||||||| ||| | |||||||| |||||||||||    
T  28062903 tattgattttcgg-----agatattaatttttggttcagggaccaaagtggtaaattttttactttcactttagtccttatgacaccttatactctttgt 28062809  T
Q  217 cagcataaaacctttgtcaca 237  Q
     || ||||||| |||| ||||    
T  28062808 tagtataaaacttttgccaca 28062788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 28006374 - 28006565
Alignment:
Q  29 aagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattttt 128  Q
    ||||||| ||| ||||||||||| |||| |||||||||||||||||||| |||| |||||||||  |||| |||||||||||||| ||||||||||||||    
T  28006374 aagtctctcgcaaccacataacaactttgttgaggaagatgacccagttcttgaagaagagcaactcttcattgggacgagtttgaggatattgattttt 28006473  T
Q  129 ggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
    ||     |||||||||||||   ||||  ||||||||||  || ||||||||||||||||| ||| ||||| || ||||||||  ||||||||||||    
T  28006474 gg-----ggatattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtgatacatcatactccctgtcagcataaa 28006565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 28063677 - 28063868
Alignment:
Q  29 aagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattttt 128  Q
    ||||||| ||| ||||||||||| |||| |||||||||||||||||||| |||| |||||||||  |||| |||||||||||||| ||||||||||||||    
T  28063677 aagtctctcgcaaccacataacaactttgttgaggaagatgacccagttcttgaagaagagcaactcttcattgggacgagtttgaggatattgattttt 28063776  T
Q  129 ggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
    ||     |||||||||||||   ||||  ||||||||||  || ||||||||||||||||| ||| ||||| || ||||||||  ||||||||||||    
T  28063777 gg-----ggatattgatttttagttcagtgaccaaagtgaccactttctattttcactttagtccttgtgatacatcatactccctgtcagcataaa 28063868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 24199275 - 24199161
Alignment:
Q  14 cagagacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttg 113  Q
    ||||| ||||| ||||| |||||||| |||||||| || ||| ||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||    
T  24199275 cagaggcctaacaacaattctcccgcaaccacataccaacttcattgaggaagatgacccagttcttgacgaagagcaacacttcgttggggcgggtttg 24199176  T
Q  114 gggatattgattttt 128  Q
    |||||||||||||||    
T  24199175 gggatattgattttt 24199161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 9626201 - 9626442
Alignment:
Q  12 agcagagacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtt 111  Q
    ||||| ||||||| |||||||||||| | ||||||| ||| ||| |||||| ||||||||  |||| ||||||||||| || ||||| ||||||||||||    
T  9626201 agcagggacctaacaacaagtctcccacaaccacattacaacttcattgagaaagatgacttagttcttgacgaagagaaacacttccttgggacgagtt 9626300  T
Q  112 tggggatattgatttttgg----------------ttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccct 195  Q
    |  ||||||||||||| ||                |||| ||||||| ||||||| |||| |||  ||||||| || |||||| |||||||||| | | |    
T  9626301 taaggatattgattttcgggtcaggaatattgattttcaaggatattaattttcggttcagggattaaagtggtcaatttctactttcactttagttcat 9626400  T
Q  196 gtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  9626401 gtgacacctcatactctttgtcagcataaaacttttgtcaca 9626442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 31074329 - 31074136
Alignment:
Q  60 gaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggatat----------------tg 143  Q
    ||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||                ||    
T  31074329 gaggaagatgacctagttcttgacgaagagcaacatttcgttgggacgagtttggggatattgattttcggttcatggatattgttttccagtgataatg 31074230  T
Q  144 attttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    ||||||   ||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||| | |||| |||||||||| |||| ||||    
T  31074229 attttcaggtcagggaccaaagtgatcattttctattttcactttagtccccgtgacacctcataccccttgttagcataaaacatttgccaca 31074136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 28525137 - 28525004
Alignment:
Q  15 agagacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgg 114  Q
    |||||||||| ||||| ||| ||||  |||||  ||| ||| |||||||||||||||||| || || | ||||||||| |||||||||||||||||||||    
T  28525137 agagacctaacaacaaatcttccgcagccacaagacaacttcattgaggaagatgacccaattattaaagaagagcaacacttcgttgggacgagtttgg 28525038  T
Q  115 ggatattgatttttggttcatggatattgatttt 148  Q
    |||||||||||||  ||||| ||||| |||||||    
T  28525037 ggatattgattttcagttcagggataatgatttt 28525004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 31075077 - 31075183
Alignment:
Q  21 ctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatat 120  Q
    ||||||||||||||||||| ||| || | || ||  ||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  31075077 ctaaaaacaagtctcccgccaccgcagagcagctccattgaggaacatggcccagttcttgacgaagatcaatacttcgttgggacgagttttgggatat 31075176  T
Q  121 tgatttt 127  Q
    |||||||    
T  31075177 tgatttt 31075183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 39138544 - 39138645
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||| | |||| | |||||||  ||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||||    
T  39138544 ggatattgattttcggtacaagaatcaaagtgaccattttctactttcactttagtccttgtgacacctcatacactttgtcagcataaaacttttgtca 39138643  T
Q  236 ca 237  Q
    ||    
T  39138644 ca 39138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 28526425 - 28526524
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcac 236  Q
    |||||||||||||| |||||| |||||| ||  |||||||||||||||||||| || || |||||||||||| || |||||| |||||| ||||||||||    
T  28526425 gatattgattttcggttcaagaaccaaaatgatcattttctattttcactttagtcactatgacacctcatattccttgtcaccataaatcctttgtcac 28526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 41754687 - 41754768
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtca 218  Q
    |||||||||||||| |||| |||||||||||  |||||| || ||||||||||||||||||||||| |||||||| ||||||    
T  41754687 gatattgattttcgattcatggaccaaagtgaccattttttactttcactttaatccctgtgacacatcatactccttgtca 41754768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 31075171 - 31075270
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||  |||| |||||||||||  || |||||| ||||| |||| ||| ||||||||||| ||||| |||||| ||||||||||||||||    
T  31075171 ggatattgattttcagttcagggaccaaagtgaccactttctactttca-tttagtccttgtgacacctcgtactccttgtcaccataaaacctttgtca 31075269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 9625522 - 9625421
Alignment:
Q  26 aacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatt 125  Q
    ||||||||| | || |||| | |||| ||| ||||||||||||| |||| || | || ||||||||| ||||| |||||||||||||| |||||||||||    
T  9625522 aacaagtcttctgcaaccatagaacaacttcattgaggaagatggcccaattctagatgaagagcaacacttcattgggacgagtttgaggatattgatt 9625423  T
Q  126 tt 127  Q
    ||    
T  9625422 tt 9625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 28525001 - 28524900
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||| |||| |||||||| ||   ||||| || |||||||||| ||| | |||||| ||||||||||||||| ||||||| ||||| ||    
T  28525001 ggatattgattttcggttcacggaccaaaatgacaattttttactttcactttagtccatctgacacttcatactctttgtcaacataaaatctttgcca 28524902  T
Q  236 ca 237  Q
    ||    
T  28524901 ca 28524900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 28526372 - 28526443
Alignment:
Q  62 ggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttca 134  Q
    |||||||||| ||||| |||||||||||||| ||||||||| ||||||||| | |||||||||||| ||||||    
T  28526372 ggaagatgactcagttcttgacgaagagcaacacttcgttgagacgagttt-gagatattgattttcggttca 28526443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 33315101 - 33315001
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||| ||||||  |||| |||||||||||   |||||||| |||||||||  ||| ||||||||||||||||| ||||||||| ||||| | |||||    
T  33315101 ggatattaattttcaattcacggaccaaagtgactattttctactttcactttggtccatgtgacacctcatactccttgtcagcaaaaaacatgtgtca 33315002  T
Q  236 c 236  Q
    |    
T  33315001 c 33315001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 41754211 - 41754127
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagc 220  Q
    ||||||||||||||| |||| |||||||||||   ||||| || |||||||||| ||||| |||||| |||||||| ||||||||    
T  41754211 ggatattgattttcgattcagggaccaaagtgactattttttactttcactttagtccctatgacacgtcatactccttgtcagc 41754127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 32898345 - 32898417
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||| ||||||||||||||    
T  32898345 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcata 32898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 1952872 - 1952942
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||||| ||||||||||||    
T  1952872 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcata 1952942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 36033045 - 36032944
Alignment:
Q  19 acctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggat 118  Q
    |||||| |||||||||| ||  |||| ||||||  || || ||  ||||||||| |||| |||||||||||||| | ||||||||||| |||||||| ||    
T  36033045 acctaacaacaagtctctcgtaaccagataacagtttcatcgaataagatgaccaagttcttgacgaagagcaacatttcgttgggacaagtttgggaat 36032946  T
Q  119 at 120  Q
    ||    
T  36032945 at 36032944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 9625433 - 9625333
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||| |||| | || ||||||  ||||||||| |||||||||||||  |  || |   ||||||| ||||||||||||||| |||||||    
T  9625433 ggatattgattttcgattcacgaactaaagtgaccattttctactttcactttaatctttacgataatccatactccttgtcagcataaaacatttgtca 9625334  T
Q  236 c 236  Q
    |    
T  9625333 c 9625333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 24199157 - 24199077
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    |||| |||||||| ||  |||||| || |||||||||| |  |||||||||||||||| | ||||||||||||||| ||||    
T  24199157 ttcagggaccaaaatgatcattttttactttcactttagtatctgtgacacctcataccccttgtcagcataaaacatttg 24199077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 41121348 - 41121276
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | ||||||||||||||||   |||||||| ||||||||||  || ||| ||||||||||    
T  41121348 ggatattgatttttggttcaaggaccaaagtgacaattttctactttcactttagcccttgttacacctcata 41121276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 35178707 - 35178777
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| || ||||||||  ||||||||| |||||||||  ||||| ||||||||||||    
T  35178707 atattgatttttggttcaggggccaaagtgatcattttctagtttcactttggtccctatgacacctcata 35178777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 45476403 - 45476317
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataa 224  Q
    ||||||||||| | |||| |||||||||||   |||||||| |||||||||  || |||||||||||| || || | ||||||||||    
T  45476403 atattgatttttggttcagggaccaaagtgacaattttctactttcactttggtctctgtgacacctcttaatcctcgtcagcataa 45476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 139
Target Start/End: Original strand, 28619427 - 28619456
Alignment:
Q  110 tttggggatattgatttttggttcatggat 139  Q
    ||||||||||||||||||||||||||||||    
T  28619427 tttggggatattgatttttggttcatggat 28619456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 30134807 - 30134743
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacac 202  Q
    ||||||||||| | || |||||||||||||   |||||||| |||||||||| || |||||||||    
T  30134807 atattgatttttggttaaaggaccaaagtgacaattttctactttcactttagtctctgtgacac 30134743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 8975498 - 8975303
Alignment:
Q  41 accacataacatctttatt-gaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggat 139  Q
    ||||||||||| ||| ||| ||||||||||| ||| || |||||||||||||| ||||||||||||  |||||||||||||||||||| |||||  ||||    
T  8975498 accacataacaacttcatttgaggaagatgatccaattcttgacgaagagcaacacttcgttgggagaagtttggggatattgattttcggttcggggat 8975399  T
Q  140 attgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||| | ||   |||||||||||  ||||||||| |||||||||| ||||||||||| ||||||||| ||||| ||||||||| |||||||    
T  8975398 attgatttttggtttcgggaccaaagtgaccattttctactttcactttagtccctgtgacatctcatactccttgtcggcataaaacatttgtca 8975303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 11060557 - 11060759
Alignment:
Q  28 caagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||||||||||| ||||||||||| ||| |||||||||||| ||| |||| ||| |||||||||| ||||| ||| ||||||||||  ||||||||||||    
T  11060557 caagtctcccgcaaccacataacaacttcattgaggaagattacctagttcttggcgaagagcaacacttcattgcgacgagtttgtagatattgatttt 11060656  T
Q  128 tggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaac 227  Q
     |||||| ||||||||||||||  |||| ||| |||||||   |||||||| |||||||||| ||  ||||| ||||||||| | ||||||| |||||||    
T  11060657 cggttcagggatattgattttctgttcagggatcaaagtgacaattttctactttcactttagtcattgtga-acctcataccccttgtcagaataaaac 11060755  T
Q  228 cttt 231  Q
    ||||    
T  11060756 cttt 11060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 50106949 - 50107182
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| ||||||||||||   |||||| |||| ||| |||||||||||||| |||||| ||||||||||| || | ||||||||||||||||||||||    
T  50106949 gacctaacaacaagtctcccttaaccacaaaacaacttcattgaggaagatgatccagttattgacgaagagtaacaattcgttgggacgagtttgggga 50107048  T
Q  118 tattgatttttggttcatggatattg----------------attttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgaca 201  Q
    |||||||||| |||| | ||||||||                ||||||| || |||||||||||||  ||| | ||| |||||| ||| ||| |||||||    
T  50107049 tattgattttcggtttagggatattgatttttggggatattaattttcggttaaaggaccaaagtgaccatgtcctactttcacgttagtccatgtgaca 50107148  T
Q  202 cctcatactctttgtcagcataaaacctttgtca 235  Q
    |||||||||| |||||||||||||||||||||||    
T  50107149 cctcatactccttgtcagcataaaacctttgtca 50107182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11059977 - 11059759
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| | |||||||||| | |||||| |||| ||| |  |||||||||||| || || || || |||||||| ||||||||| ||| |||||  |||    
T  11059977 gacctaacatcaagtctccctcaaccacagaacaacttcaacgaggaagatgacacaattcttaacaaagagcaacacttcgttgagacaagtttaagga 11059878  T
Q  118 tattgatttttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtc 217  Q
    |||||||||  |||| | ||||||| ||||||| || | ||| |||||||   ||||| ||  | ||||||| ||||||||||||||||||||| |||||    
T  11059877 tattgatttgcggtttagggatattaattttcggttgagggatcaaagtgacaattttttacctccactttagtccctgtgacacctcatactccttgtc 11059778  T
Q  218 agcataaaacctttgtcac 236  Q
    | |||||||| ||||||||    
T  11059777 accataaaacttttgtcac 11059759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 1407980 - 1407874
Alignment:
Q  42 ccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggatat 141  Q
    |||||||||| ||| ||| ||||| ||||||||||| ||| ||||||| || |||||||||||||||||||||  ||||| ||||| |||||||||||||    
T  1407980 ccacataacaacttcattaaggaa-atgacccagttcttgtcgaagagtaacacttcgttgggacgagtttggacatatttattttcggttcatggatat 1407882  T
Q  142 tgattttc 149  Q
    ||||||||    
T  1407881 tgattttc 1407874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 29766199 - 29766069
Alignment:
Q  98 cgttgggacgagtttggggatattgatttttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgt 197  Q
    |||| ||||||||||  ||||||||||||| ||     |||||||||||||   |||| |||||||||||   ||||||||||||||||||| |  || |    
T  29766199 cgttaggacgagttttaggatattgattttcgg-----ggatattgattttttgttcagggaccaaagtgacaattttctattttcactttagtaactat 29766105  T
Q  198 gacacctcatactctttgtcagcataaaacctttgt 233  Q
    ||||||||||||| |||||||||||||||| |||||    
T  29766104 gacacctcatactatttgtcagcataaaacatttgt 29766069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 6612653 - 6612567
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcat 222  Q
    ||||||||||||| | ||||||||| ||||||  ||||||||| ||| | |||| |||||||||||||||||| || ||||||||||    
T  6612653 ggatattgatttttggttcaaggacaaaagtgatcattttctactttgaatttagtccctgtgacacctcatattccttgtcagcat 6612567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 44720728 - 44720829
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctc--atactctttgtcagcataaaacctttgtc 234  Q
    |||||||||||||| |||||| |||||||||   |||||||| |||||||||| ||  |||||||||||  |||| |||||||||||||| || ||||||    
T  44720728 gatattgattttcggttcaagaaccaaagtgacaattttctactttcactttagtcagtgtgacacctcatataccctttgtcagcataagacttttgtc 44720827  T
Q  235 ac 236  Q
    ||    
T  44720828 ac 44720829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 11830132 - 11830061
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcat 207  Q
    ||||||||||||| | ||| |||| |||| ||  ||||||||| |||||||||||||| |||||||||||||    
T  11830132 ggatattgatttttggttctaggatcaaaatgaccattttctactttcactttaatccatgtgacacctcat 11830061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 44719727 - 44719596
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| ||| ||||| | || |||||  |||| ||| || |||||||||||    ||| ||||| |||||||| |||| ||||| |||||||||||||    
T  44719727 gacctaacaacgagtcttctgcaaccacggaacaacttcatcgaggaagatgatttggttcttgacaaagagcaacacttagttggtacgagtttgggga 44719628  T
Q  118 tattgatttttggttcatggatattgattttc 149  Q
    |||| ||||  |||||| ||||||| ||||||    
T  44719627 tattaatttccggttcagggatattaattttc 44719596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 534428 - 534510
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtca 218  Q
    ||||||||||||||| |||  ||| |||||||  |||||| || |||||||||| |||| ||||||| |||||||| ||||||    
T  534428 ggatattgattttcgattcgtggatcaaagtgatcattttttactttcactttagtccccgtgacacgtcatactccttgtca 534510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 7945456 - 7945526
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | || | |||||||||||  ||||||||| ||||||||| |||| ||||||||||||||    
T  7945456 atattgatttttggtttagggaccaaagtgaccattttctactttcactttgatccttgtgacacctcata 7945526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 9340927 - 9340997
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||| ||| | |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  9340927 atattgaattttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 9340997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 33342600 - 33342558
Alignment:
Q  195 tgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  33342600 tgtgacacctcatactccttgtcagcataaaacttttgtcaca 33342558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 25038124 - 25038023
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||| | |||| |||||||||||   |||||||| |||||||||| | | ||||||||||||||   | ||||| |||||||| | |||||    
T  25038124 ggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacctcatatgttatgtcatcataaaacatgtgtca 25038025  T
Q  236 ca 237  Q
    ||    
T  25038024 ca 25038023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 25043336 - 25043235
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||| | |||| |||||||||||   |||||||| |||||||||| | | ||||||||||||||   | ||||| |||||||| | |||||    
T  25043336 ggatattgatttttggttcagggaccaaagtgataattttctactttcactttagttcatgtgacacctcatatgttatgtcatcataaaacatgtgtca 25043237  T
Q  236 ca 237  Q
    ||    
T  25043236 ca 25043235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 1001394 - 1001326
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacct 204  Q
    ||||||||||||||| |||||||| ||||||    |||||||| |||||||||| ||| ||||||||||    
T  1001394 ggatattgattttcggttcaaggatcaaagtaactattttctactttcactttagtccatgtgacacct 1001326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 9339869 - 9339797
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | ||||  ||||||||||  ||||||||| |||||||||  ||||||||||| ||||||    
T  9339869 ggatattgatttttggttcagagaccaaagtgaccattttctactttcactttggtccctgtgacatctcata 9339797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 1407855 - 1407802
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctc 205  Q
    ||||||||||||||||   |||||||| |||||||||| ||| |||||||||||    
T  1407855 ttcaaggaccaaagtgataattttctactttcactttagtccatgtgacacctc 1407802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 32665669 - 32665742
Alignment:
Q  136 ggatattgattttcgc-ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| |  |||| |||||||||||  ||||||||| |||||||||  ||| ||||||||||||||    
T  32665669 ggatattgatttttgtgttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcata 32665742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 3117892 - 3117820
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||| ||||| | ||||||||| ||| ||  ||||||||| |||||||||| ||  ||||||||||||||    
T  3117892 ggatattaatttttggttcaaggactaaaatgatcattttctactttcactttagtcattgtgacacctcata 3117820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 51450243 - 51450171
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||| ||||| | |||| |||| | ||||  ||||||||| ||||| |||| ||||||||||||||||||    
T  51450243 ggatatttatttttggttcatggactatagtgatcattttctactttcagtttagtccctgtgacacctcata 51450171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 26586071 - 26586270
Alignment:
Q  32 tctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggt 131  Q
    |||||||| |||||| |||| ||| || |||||| |||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  26586071 tctcccgcaaccacagaacaacttcatcgaggaaaatgaccaagtttttgacgaagagcaacactttgttgggatgagtttggggatattgatttttggt 26586170  T
Q  132 tcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaaccttt 231  Q
    ||| ||||||| ||||||| ||||  || | |||||   |||||||| |||||||||| || ||  | |||||||||||||||||||||| ||| |||||    
T  26586171 tcagggatattaattttcggttcagagatcgaagtgacaattttctactttcactttagtctctacggcacctcatactctttgtcagcacaaatccttt 26586270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 12745967 - 12746182
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| || ||| ||| ||| |||||| |||| ||| ||||||||||||||| ||||| |||||||| ||||| | |||||||||| |||||||  |     
T  12745967 gacctaacaataagcctctcgcaaccacaaaacaacttcattgaggaagatgactcagttcttgacgaaaagcaacatttcgttgggatgagtttgaagc 12746066  T
Q  118 tattgatttttggttcatggatattgatttt-cgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgt 216  Q
    |||||||||| ||      |||||||||||| || |  | ||| |||| ||  ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  12746067 tattgattttcgga-----gatattgatttttcggtctagggatcaaaatgatcattttctactttcactttagtccctgtgacacctcatactctttgt 12746161  T
Q  217 cagcataaaacctttgtcaca 237  Q
    ||||||||||| |||||||||    
T  12746162 cagcataaaacttttgtcaca 12746182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 37607435 - 37607245
Alignment:
Q  41 accacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggata 140  Q
    |||||| |||| ||| ||| ||||||||||||||||| |||| ||||||||| |||| |||| ||||||||||||||||||||||     |||  |||||    
T  37607435 accacaaaacaacttcattaaggaagatgacccagttcttgaggaagagcaacacttagttgagacgagtttggggatattgatt-----ttcgaggata 37607341  T
Q  141 ttgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcac 236  Q
    |||||||| | ||||  ||||||||||   ||||||||  ||||||||| ||| ||||||| ||||||||  |||| |||||||||||||||||||    
T  37607340 ttgatttttggttcagagaccaaagtgactattttctacgttcactttagtccttgtgacatctcatacttcttgttagcataaaacctttgtcac 37607245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 18675459 - 18675328
Alignment:
Q  19 acctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggat 118  Q
    |||||| | |||||||||||  ||||| ||||| ||| |||||||||||| ||| |||| ||||||||||| || ||||| |||||||||||||||||||    
T  18675459 acctaacatcaagtctcccgtaaccacctaacaacttcattgaggaagataacctagttcttgacgaagagaaacacttctttgggacgagtttggggat 18675360  T
Q  119 attgatttttggttcatggatattgattttcg 150  Q
    ||||||||| | | ||  ||||||||||||||    
T  18675359 attgattttcgatccaatgatattgattttcg 18675328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 14887294 - 14887391
Alignment:
Q  31 gtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattttt 128  Q
    ||||||||| |||||| |||| | | |||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  14887294 gtctcccgcaaccacagaacaacgtcattgaggaagatgacctagttcttgaagaagagcaacacttcgttgggacgagtttgaggatattgattttt 14887391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 237
Target Start/End: Original strand, 34582446 - 34582651
Alignment:
Q  48 aacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggatattgattt 147  Q
    |||| ||| |||| |||| ||||||||||| |||||||||||||| |||| ||||| | ||||||| |||||||||||| ||||||| ||||||||||||    
T  34582446 aacagcttcattggggaatatgacccagttattgacgaagagcaacactttgttggaatgagtttgaggatattgatttatggttcaaggatattgattt 34582545  T
Q  148 tcg----------------cttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaaccttt 231  Q
    |||                 |||| |||| ||||||||||||||||| ||| |||||| | | |||||||||||||||   |||||||||||||||||||    
T  34582546 tcggggatattgattttttattcagggactaaagtggacattttctacttttactttagttcatgtgacacctcatacctcttgtcagcataaaaccttt 34582645  T
Q  232 gtcaca 237  Q
    | ||||    
T  34582646 gccaca 34582651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 26585318 - 26585229
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    ||||||| ||||||| |||| |||||||||||  ||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  26585318 ggatatttattttcggttcagggaccaaagtgaccattt-ctattttcactttagtccctgtgacacctcatactccttgtcaacataaaa 26585229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 14887378 - 14887479
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    |||||||||||||   |||| |||||| | ||  ||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||    
T  14887378 ggatattgatttttaattcagggaccatattgaccattttctactttcactttagtccctgtgacacctcatactccttgttagcataaaacatttgtca 14887477  T
Q  236 ca 237  Q
    ||    
T  14887478 ca 14887479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 18676606 - 18676722
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| | ||||||| || | |||||| | || ||| |||||||||||||||| |||| ||||||||||| || ||||||||| ||||| ||||| ||    
T  18676606 gacctaacatcaagtcttccacaaccacagatcagcttcattgaggaagatgacctagttcttgacgaagagtaacacttcgttgagacgactttggaga 18676705  T
Q  118 tattgatttttggttca 134  Q
    ||||||||||| |||||    
T  18676706 tattgattttttgttca 18676722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 38854289 - 38854399
Alignment:
Q  17 agacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggg 116  Q
    |||||||| |||||||||||||| |||| | |||| ||| |||||||||||||| ||  || |||| ||||||||| |||||||||||| ||||||| |     
T  38854289 agacctaacaacaagtctcccgcaaccatagaacaacttcattgaggaagatgatccgtttcttgaagaagagcaacacttcgttgggatgagtttgaga 38854388  T
Q  117 atattgatttt 127  Q
    ||||| |||||    
T  38854389 atatttatttt 38854399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 26585415 - 26585299
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| |||||||||||| | || ||| |||| ||| |||||| |||||||||||||| | ||| |||||||| |||||||||| | ||||||  |||    
T  26585415 gacctaacaacaagtctcccacaactacagaacaacttcattgagaaagatgacccagttctagacaaagagcaacacttcgttggaatgagtttaagga 26585316  T
Q  118 tattgatttttggttca 134  Q
    |||| ||||| ||||||    
T  26585315 tatttattttcggttca 26585299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 38853994 - 38853898
Alignment:
Q  140 attgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcac 236  Q
    ||||||||||| |||||||||||| | |   ||| |||| ||||| |||| ||||||||||||||||||||| |||| |||||||||| ||||||||    
T  38853994 attgattttcggttcaaggaccaaggcgactattatctactttcaatttagtccctgtgacacctcatactccttgttagcataaaacttttgtcac 38853898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 38854100 - 38854001
Alignment:
Q  48 aacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggatattgattt 147  Q
    |||| ||| |||||| |||||||| ||||| |||||||||| |||    || ||||||||||||||| |||||||||||| ||||||||||||||||| |    
T  38854100 aacaacttcattgagaaagatgactcagttcttgacgaagaacaac---tcattgggacgagtttggagatattgattttcggttcatggatattgatgt 38854004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 14886700 - 14886610
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    ||||||||||||||  |||||||||||||| |   ||||| || ||||| |||| ||||| |||| |||||||||||||||||||||||||    
T  14886700 ggatattgattttctgttcaaggaccaaagcgacaattttgtactttcattttagtccctatgacgcctcatactctttgtcagcataaaa 14886610  T

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Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 14886796 - 14886688
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| |||||||||||||| || ||| ||||  || ||||| |||||||||| |||| ||||||||| | || |||||||||  || ||||||||||    
T  14886796 gacctaacaacaagtctcccgcaacaacaaaacaatttcattgatgaagatgacc-agttcttgacgaagcgtaacacttcgttgaaacaagtttgggga 14886698  T
Q  118 tattgatttt 127  Q
    ||||||||||    
T  14886697 tattgatttt 14886688  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 38855088 - 38855035
Alignment:
Q  97 tcgttgggacgagtttggggatattgatttttggttcatggatattgattttcg 150  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||    
T  38855088 tcgttgggatgagtttggagatattgatttttggttcatggatattgatgttcg 38855035  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 21733653 - 21733752
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    ||||||||||||| ||||  ||||||||||  |||||| || |||||||||| ||   ||||||| |||||||| ||||||||||||||| | |||||||    
T  21733653 atattgattttcggttcagagaccaaagtgaccattttttactttcactttagtcatcgtgacacttcatactccttgtcagcataaaacatgtgtcaca 21733752  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 38854601 - 38854656
Alignment:
Q  177 tattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    ||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||    
T  38854601 tattttcactttagtccctgtgacaactcatactctttgtcaccttaaaacctttg 38854656  T

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Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 38856018 - 38856097
Alignment:
Q  48 aacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||| ||| |||||||||||||||||  || |||||||| ||||| |||||||||||| ||||||| | |||||||||||    
T  38856018 aacagcttcattgaggaagatgacccgtttcttgacgaaaagcaacacttcgttgggatgagtttgagaatattgatttt 38856097  T

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Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 39015226 - 39015156
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||||||||||| ||  ||||||||| |||||||||  ||||||||||||||||||    
T  39015226 atattgatttttggttcaaggaccaaactgaccattttctactttcactttggtccctgtgacacctcata 39015156  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 40000237 - 40000307
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||||||||||||||  ||||||||| |||||||||  ||||| ||||||||||||    
T  40000237 atattgatttttggttcaaggaccaaagtgatcattttctactttcactttggtccctctgacacctcata 40000307  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 12003775 - 12003714
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    ||||||||||||||||||| ||||||||||| ||||| | |||||| |||||||||| ||||    
T  12003775 attttctattttcactttagtccctgtgacatctcatgcactttgtaagcataaaacatttg 12003714  T

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Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 18675310 - 18675226
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    |||||||| |||||||   |||||||| ||| |||||| ||| |||||||||||||||| ||| |||||||||||| |||||||||    
T  18675310 ttcaaggatcaaagtgacaattttctactttgactttagtcc-tgtgacacctcatactttttatcagcataaaacatttgtcaca 18675226  T

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Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 34037553 - 34037654
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||| | |||| | | |||||||   |||||||| | |||||||| ||  ||||||||||||||||| ||||||||||||||| | |||||    
T  34037553 ggatattgatttttggttcaggaatcaaagtgactattttctactgtcactttagtctgtgtgacacctcatactccttgtcagcataaaacatgtgtca 34037652  T
Q  236 ca 237  Q
    ||    
T  34037653 ca 34037654  T

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Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 38855028 - 38854943
Alignment:
Q  140 attgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
    ||||||||||| |||||||||||| |||   ||| |||| ||||| ||||  |||||||||||||||||||| |||| ||||||||    
T  38855028 attgattttcggttcaaggaccaaggtgactattatctactttcaatttagcccctgtgacacctcatactccttgttagcataaa 38854943  T

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Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 14704228 - 14704156
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||   |||||||| |||||||||  ||||||||||||||||||    
T  14704228 ggatattgatttttggttcatggaccaaagtgactattttctactttcactttggtccctgtgacacctcata 14704156  T

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Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 17330119 - 17330191
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||  |||||| || |||||||||| || |||||||||||||||    
T  17330119 ggatattgattttgggttcagggaccaaagtgaccattttttactttcactttagtctctgtgacacctcata 17330191  T

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Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 24458283 - 24458211
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | || | |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  24458283 ggatattgatttttgattgagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 24458211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 32765160 - 32765088
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| ||||||||| |  ||||||||| |||||||||| ||||| ||||||||||||    
T  32765160 ggatattgatttttggttcagggaccaaagcgaccattttctactttcactttagtccctatgacacctcata 32765088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 43380810 - 43380738
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| |||||||||| | | ||||||||||||||    
T  43380810 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttagttcatgtgacacctcata 43380738  T

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Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 31442574 - 31442483
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaac 227  Q
    ||||||||||||||| |||| ||||||| |||  ||||||  | |||||||||| ||| | ||||||||||| | ||||||||||| |||||    
T  31442574 ggatattgattttcggttcagggaccaatgtgttcatttttgactttcactttagtccttatgacacctcatgcactttgtcagcacaaaac 31442483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 31091429 - 31091499
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||| ||||||||||  ||||||||| |||||||||  || |||||||||||||||    
T  31091429 atattgatttttggttcaaagaccaaagtgaccattttctactttcactttggtctctgtgacacctcata 31091499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 38856291 - 38856348
Alignment:
Q  180 tttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    |||||||||| | || ||| || |||||||||||||||||| ||||||||||||||||    
T  38856291 tttcactttagttcccgtggcaactcatactctttgtcagcttaaaacctttgtcaca 38856348  T

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Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 24459356 - 24459426
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| ||| |||||||  ||||||||| |||||||||  ||||| ||||||||||||    
T  24459356 atattgatttttggttcagggatcaaagtgaccattttctactttcactttggtccctatgacacctcata 24459426  T

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Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 31443126 - 31443196
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcat 207  Q
    |||||||||||||| |||| | |||||| ||   |||||||| |||||||||| || ||||||||||||||    
T  31443126 gatattgattttcggttcaggaaccaaaatgacaattttctactttcactttagtcactgtgacacctcat 31443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 39016285 - 39016355
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||   |||||||| |||||||||  ||| ||||||||||||||    
T  39016285 atattgatttttggttcagggaccaaagtgacaattttctactttcactttggtccatgtgacacctcata 39016355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 17466261 - 17466212
Alignment:
Q  159 accaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||||  ||||||||| ||| |||||||||| ||||||||||||||    
T  17466261 accaaagtgatcattttctacttttactttaatccatgtgacacctcata 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 226
Target Start/End: Original strand, 18676704 - 18676793
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    ||||||||||||   |||| |||||||||||  ||||||||| |||| ||||| || || |||||  |||||||| ||||| ||||||||    
T  18676704 gatattgattttttgttcagggaccaaagtgaccattttctactttcgctttagtctctttgacatttcatactccttgtcggcataaaa 18676793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 2910328 - 2910300
Alignment:
Q  110 tttggggatattgatttttggttcatgga 138  Q
    |||||||||||||||||||||||||||||    
T  2910328 tttggggatattgatttttggttcatgga 2910300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 7073857 - 7073805
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacct 204  Q
    |||| |||||||||||  |||||| ||||||| ||||| ||||||||||||||    
T  7073857 ttcagggaccaaagtgatcattttttattttcgctttagtccctgtgacacct 7073805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 7412335 - 7412263
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||| |||| | || | ||| |||||||  |||||||||||||||||||| ||| |||||||| |||||    
T  7412335 ggatattgttttttggttgagggaacaaagtgaccattttctattttcactttagtccttgtgacacatcata 7412263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 14704233 - 14704205
Alignment:
Q  110 tttggggatattgatttttggttcatgga 138  Q
    |||||||||||||||||||||||||||||    
T  14704233 tttggggatattgatttttggttcatgga 14704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 21732338 - 21732274
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgac 200  Q
    ||||||| ||||| | |||| |||||||||||  ||||||||| |||||||||| |||| |||||    
T  21732338 ggatattaatttttggttcagggaccaaagtgaccattttctactttcactttagtcccggtgac 21732274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 43381071 - 43381143
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||||||||   |||| |||||||| ||   |||||||||||| |||||| ||| ||||||||||||||    
T  43381071 ggatattgattttgtgttcagggaccaaaatgactattttctatttttactttagtccttgtgacacctcata 43381143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 2786566 - 2786365
Alignment:
Q  36 ccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcat 135  Q
    |||| ||||||||||| ||||||||||||||||||||||  | |||||||||| ||| ||||||||||||| | ||   ||||||||||||| | ||||     
T  2786566 ccgccaccacataacaactttattgaggaagatgacccaactgttgacgaagaacaacacttcgttgggacaaattcatggatattgattttcgattcag 2786467  T
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
     |||||||||||||| ||||  ||||||||||  ||||||||| ||| |||||||||| | |||||| ||||||||||||| |||||| || ||||||||    
T  2786466 agatattgattttcggttcagagaccaaagtgaccattttctacttttactttaatccatatgacacttcatactctttgtgagcatacaatctttgtca 2786367  T
Q  236 ca 237  Q
    ||    
T  2786366 ca 2786365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 21622893 - 21623088
Alignment:
Q  26 aacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatt 125  Q
    ||||||||||| || |||||| |||| ||| ||||||| ||||||||||||| ||||| |||| ||||| || |||||  ||||||| || |||||||||    
T  21622893 aacaagtctcctgcaaccacaaaacaacttcattgaggtagatgacccagttcttgacaaagaacaataatttgttggc-cgagtttcggaatattgatt 21622991  T
Q  126 tttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
    || |      ||| ||||||||||| ||||  || |||||||  ||||||||| ||||| |||| || |||||||||||||||||| ||||||| |||||    
T  21622992 ttcga-----ggagattgattttcggttcatagagcaaagtgaccattttctactttcattttagtctctgtgacacctcatactccttgtcagtataaa 21623086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 237
Target Start/End: Original strand, 24745846 - 24746056
Alignment:
Q  43 cacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattga-tttttggttcatggatat 141  Q
    ||||||||| ||| |||||||||||||||||| || ||| ||||| |||| |||| ||| ||||||||||||| ||||| | ||||||||||| ||||||    
T  24745846 cacataacaacttcattgaggaagatgacccaattcttgtcgaagtgcaacactttgtt-ggacgagtttgggaatattaattttttggttcagggatat 24745944  T
Q  142 tgatttt----------------cgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
    |||||||                || |||| |||||||||||   ||||||||||||||||||| ||  ||||||||||||| ||||||  |||||||||    
T  24745945 tgattttttgggatattaatttccggttcagggaccaaagtgataattttctattttcactttagtctgtgtgacacctcattctcttttccagcataaa 24746044  T
Q  226 acctttgtcaca 237  Q
    || |||||||||    
T  24746045 acttttgtcaca 24746056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 32244548 - 32244423
Alignment:
Q  100 ttgggacgagtttggggatattgatttttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtga 199  Q
    ||||||||||||| |||||||||||||| |      ||||||||||||||| | ||  || |||||||  |||||| || |||||||||| || ||||||    
T  32244548 ttgggacgagtttcgggatattgattttcga-----ggatattgattttcggtgcagagatcaaagtgaccattttttactttcactttagtctctgtga 32244454  T
Q  200 cacctcatactctttgtcagcataaaacctt 230  Q
    |||| ||||||||||||||||||||||||||    
T  32244453 caccccatactctttgtcagcataaaacctt 32244423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 237
Target Start/End: Original strand, 24753332 - 24753542
Alignment:
Q  29 aagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattttt 128  Q
    |||||||| || |||| | |||| ||| ||| ||||||||  |||| || |||||||||| ||  ||||||||||||||||||||| ||||||| |||||    
T  24753332 aagtctccagcaaccatagaacaacttcattaaggaagattgcccaattcttgacgaagatcagcacttcgttgggacgagtttggagatattggttttt 24753431  T
Q  129 -ggttcatggatattgattttcgcttcaaggaccaaagtggaca--ttttctattttcactttaatccctgtgacacctcatactctttgtcagcataaa 225  Q
     | |||| ||||||| ||||||| || |  ||| ||||| ||||  |||| || |||||||||| || | |||||||||||  ||||||| |||||||||    
T  24753432 cgattcagggatattaattttcgatttagagactaaagt-gacaatttttttactttcactttagtctccgtgacacctcaatctctttgacagcataaa 24753530  T
Q  226 acctttgtcaca 237  Q
    || |||| ||||    
T  24753531 acttttgccaca 24753542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 19050479 - 19050407
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| ||||||||||||||||||  |||||| || |||||||||| ||| ||||||||||||||    
T  19050479 ggatattgatttttgcttcaaggaccaaagtgatcattttatactttcactttagtccatgtgacacctcata 19050407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 21622190 - 21622068
Alignment:
Q  29 aagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgg-gacgagtttggggatattgatttt 127  Q
    ||||| ||||| | ||||||||| ||| ||| |||||||||| | |||| || ||||||||||| | ||| || | | ||||||||||||||||||||||    
T  21622190 aagtcacccgcaatcacataacaacttcattaaggaagatgatctagttcttaacgaagagcaacatttcatttgagccgagtttggggatattgatttt 21622091  T
Q  128 tggttcatggatattgattttcg 150  Q
     |||| | |||||||||||||||    
T  21622090 cggtttagggatattgattttcg 21622068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 32244603 - 32244668
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcac 236  Q
    ||||| || |||||||||| || |||||||||||||||||| |||||||||||||| |||||||||    
T  32244603 attttttactttcactttagtcactgtgacacctcatactccttgtcagcataaaatctttgtcac 32244668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 42278272 - 42278200
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  42278272 ggatattgatttttggttcagggaccaaagtgaccattttctagtttcactttggtccctgtgacacctcata 42278200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 6039364 - 6039274
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    ||||||| ||||||| |||| ||| |||||||  |||||||||   |||||||  ||||| ||||||||||||||| ||||||||||||||    
T  6039364 ggatattaattttcggttcagggagcaaagtgaccattttctacactcactttggtccctatgacacctcatactcattgtcagcataaaa 6039274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 47874786 - 47874714
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | ||||||||||||||||  |||||| || |||||||||  |||||||||||| |||||    
T  47874786 ggatattgatttttggttcaaggaccaaagtgaccattttatactttcactttggtccctgtgacacatcata 47874714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 47878386 - 47878456
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||||| ||||||||||||    
T  47878386 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctatgacacctcata 47878456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 20599788 - 20599858
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||| ||||| | |||| |||||||||||  |||||| || ||||| |||| ||||||||||||||||||    
T  20599788 atattaatttttggttcagggaccaaagtgaccattttttactttcattttagtccctgtgacacctcata 20599858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 24288629 - 24288847
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| |||||||| ||||| |||||| |||| ||| |||||||  |||| |  | | ||||||||||||||| |||| ||||||| ||||||||| |    
T  24288629 gacctaagaacaagtcacccgcaaccacagaacaacttcattgaggtggatggcataatctttgacgaagagcaacactttgttgggaggagtttggg-a 24288727  T
Q  118 tattgatttttggttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtc 217  Q
    ||||||||||| ||| | ||||||| ||||||| |||||||| |||| |   ||||||||| ||| | |||| ||| ||| |||| |||||||| |||||    
T  24288728 tattgattttttgtttagggatatttattttcggttcaaggatcaaaattaccattttctacttttattttagtccatgtcacacatcatactccttgtc 24288827  T
Q  218 agcataaaacctttgtcaca 237  Q
    ||||||||||||||||||||    
T  24288828 agcataaaacctttgtcaca 24288847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 25621502 - 25621617
Alignment:
Q  19 acctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggat 118  Q
    |||||| |||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||    
T  25621502 acctaacaacaagtctcccgcaaccacagaacaacttcattgaggaagatgacccagttcttgacgaagagcaacacttcgttgagacgagtttgaggat 25621601  T
Q  119 attgatttttggttca 134  Q
    |||| |||| ||||||    
T  25621602 attggttttcggttca 25621617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 330078 - 329990
Alignment:
Q  33 ctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatatt 121  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  330078 ctcccgcaaccacataacaacttcattgaggaagatgacccagttcttgacgaagagcaacacttcgttgggacgagtttgtggatatt 329990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 8870326 - 8870225
Alignment:
Q  48 aacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttttggttcatggatattgattt 147  Q
    |||| ||| ||||||| |||| ||| |||| |||||||||| ||| |||| ||||||||||||||| |||||||||||||  ||| | ||||||||||||    
T  8870326 aacaacttcattgaggtagataaccgagttcttgacgaagaacaacactttgttgggacgagtttgaggatattgattttcagtttagggatattgattt 8870227  T
Q  148 tc 149  Q
    ||    
T  8870226 tc 8870225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 224
Target Start/End: Complemental strand, 24287728 - 24287635
Alignment:
Q  131 ttcatggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataa 224  Q
    |||| ||||||| ||||| | |||| |||| |||| |  ||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  24287728 ttcagggatattcatttttggttcagggactaaagcgaccattttctactttcactttagtccctgtgacacctcatactccttgtcggcataa 24287635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 27067991 - 27067924
Alignment:
Q  170 cattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    ||||||||| |||||||||| || |||||||||  ||||||||||||||||||||| | |||||||||    
T  27067991 cattttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcaca 27067924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 27210322 - 27210389
Alignment:
Q  170 cattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcaca 237  Q
    ||||||||| |||||||||| || |||||||||  ||||||||||||||||||||| | |||||||||    
T  27210322 cattttctactttcactttagtctctgtgacacaccatactctttgtcagcataaaccatttgtcaca 27210389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 7258496 - 7258426
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  7258496 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 7258426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 10898975 - 10899045
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||||||||||||||  ||||||||| |||| ||||  ||||||||||||||||||    
T  10898975 atattgatttttggttcaaggaccaaagtgaccattttctactttctctttggtccctgtgacacctcata 10899045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 8048663 - 8048736
Alignment:
Q  135 tggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||| ||||||| |||| |||||||||||  ||||||||| |||||||||| ||| |||||||| |||||    
T  8048663 tggatattaattttcggttcagggaccaaagtgaccattttctactttcactttagtccatgtgacacatcata 8048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 30917920 - 30917859
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    |||||||  |||||||||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  30917920 attttcttctttcactttagtccttgtgacacctcatactctttgtcaacataaaatctttg 30917859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 8870844 - 8870904
Alignment:
Q  89 gcaatacttcgttgggacgagtttggggatattgatttttggttcatggatattgattttc 149  Q
    |||| |||| |||||||||||||||||||||||||||||  ||| | ||||||||||||||    
T  8870844 gcaacactttgttgggacgagtttggggatattgattttcagtttagggatattgattttc 8870904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 8878836 - 8878768
Alignment:
Q  57 attgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||||||||||||||||| || |||||||||||||  || ||| |||||| ||||| ||||||||||||||    
T  8878836 attgaggaagatgacccaattcttgacgaagagca--acatcgctgggacaagtttagggatattgatttt 8878768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 27068079 - 27068004
Alignment:
Q  52 tctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||| |||||||||||||||||| || |||||||||||||  || ||||| || |||||||||| ||| |||||||    
T  27068079 tcttcattgaggaagatgacccaattcttgacgaagagcagcacgtcgtttggtcgagtttgggaataatgatttt 27068004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 27210234 - 27210309
Alignment:
Q  52 tctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||| |||||||||||||||||| || |||||||||||||  || ||||| || |||||||||| ||| |||||||    
T  27210234 tcttcattgaggaagatgacccaattcttgacgaagagcagcacgtcgtttggtcgagtttgggaataatgatttt 27210309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 44333358 - 44333288
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||| ||  ||||||||||||||||||    
T  44333358 atattgatttttggttcagggaccaaagtgaccattttctactttcacgttggtccctgtgacacctcata 44333288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 48788574 - 48788644
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||| ||||||||||||||    
T  48788574 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccttgtgacacctcata 48788644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 30924909 - 30924981
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | ||||  || |||||||  ||||||||| ||||||||| ||| |||||||||||||||    
T  30924909 ggatattgatttttggttcatagatcaaagtgaccattttctactttcactttgatcactgtgacacctcata 30924981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 42477587 - 42477531
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  42477587 ttcagggaccaaagtgatcattttctactttcactttggtccctgtgacacctcata 42477531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 48777479 - 48777408
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| | | |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  48777479 ggatattgattttgg-ttcaggaatcaaagtgaccattttctattttcactttggtccctgtgacacctcata 48777408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 385529 - 385600
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcat 207  Q
    ||||||||| ||||| |||| |||| ||||||  ||||||||| || ||||||||||||| ||||| |||||    
T  385529 ggatattgactttcggttcagggactaaagtgaccattttctacttgcactttaatccctatgacatctcat 385600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 13578265 - 13578296
Alignment:
Q  191 tccctgtgacacctcatactctttgtcagcat 222  Q
    ||||||||||||||||||||||||||||||||    
T  13578265 tccctgtgacacctcatactctttgtcagcat 13578296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 34707843 - 34707777
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacac 202  Q
    ||||||| ||||| | | || ||| |||||||  |||||||||||||||||||| ||||||||||||    
T  34707843 ggatattaatttttggtccatggaacaaagtgttcattttctattttcactttattccctgtgacac 34707777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 35727919 - 35727849
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | || ||||| |||||||  ||||||||| | |||||||  ||||||||||||||||||    
T  35727919 atattgatttttggttaaaggatcaaagtgaccattttctactatcactttggtccctgtgacacctcata 35727849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 39824338 - 39824276
Alignment:
Q  170 cattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    ||||||||| |||||||||| |||||||||||| |||| | | ||||||||| ||||| ||||    
T  39824338 cattttctactttcactttagtccctgtgacacttcatgcaccttgtcagcacaaaacatttg 39824276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 48647345 - 48647415
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||| ||||||  ||||||||| |||||||||  ||| ||||||||||||||    
T  48647345 atattgatttttggttcagggacgaaagtgaccattttctactttcactttggtccttgtgacacctcata 48647415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 7259585 - 7259656
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||| ||||| | |||| |||||||||||  ||||||||| |||||||||  ||| ||||||||||||||    
T  7259585 ggatattaatttttggttcagggaccaaagtgaccattttcta-tttcactttggtccttgtgacacctcata 7259656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 12223579 - 12223651
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||||||| |||||||   ||||| || |||||||||| | ||||||||| ||||||    
T  12223579 ggatattgatttttggttcaaggatcaaagtgacaattttttactttcactttagttcctgtgacaactcata 12223651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 33607394 - 33607466
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | | ||||||||||||||  || ||| || |||||||||| ||| | ||||||||||||    
T  33607394 ggatattgatttttggtccaaggaccaaagtgaccaatttttactttcactttagtccatttgacacctcata 33607466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 42478170 - 42478241
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||||||||   |||| |||||||||||  ||||||||| ||||||||| || ||| ||||||||||||    
T  42478170 ggatattgattttttgttcatggaccaaagtgaccattttctactttcactttgat-cctatgacacctcata 42478241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 43457690 - 43457619
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | | || |||||||||||  |||||| || |||||||||| || |||||||||||||||    
T  43457690 ggatattgatttttggt-cagggaccaaagtgaccattttttactttcactttagtctctgtgacacctcata 43457619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 43461617 - 43461689
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| ||| |||||||  |||||| || |||||||||| | | ||||||||||||||    
T  43461617 ggatattgatttttggttcagggatcaaagtgaccattttttactttcactttagttcatgtgacacctcata 43461689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 44334345 - 44334373
Alignment:
Q  110 tttggggatattgatttttggttcatgga 138  Q
    |||||||||||||||||||||||||||||    
T  44334345 tttggggatattgatttttggttcatgga 44334373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 44334350 - 44334422
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||   |||||||| |||||||||  ||| ||||||| ||||||    
T  44334350 ggatattgatttttggttcatggaccaaagtgactattttctactttcactttggtccatgtgacatctcata 44334422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 23773330 - 23773479
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| || |||| |||||| |||||| ||||  || |||||| ||||||||  |||| |||| ||||||||| ||||||||| ||||| |||| |||    
T  23773330 gacctaacaataagtatcccgcaaccacaaaacaatttcattgagcaagatgacatagttcttgatgaagagcaacacttcgttgtgacgattttgagga 23773429  T
Q  118 tattgatttttggttcatggatattgattttcgcttcaaggaccaaagtg 167  Q
    ||||||||||  ||||| ||||||| ||||||| |||| |||||||||||    
T  23773430 tattgattttcagttcagggatattaattttcggttcatggaccaaagtg 23773479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 32555461 - 32555525
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    |||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||    
T  32555461 attttctactttcactttagtccatgtgacacctcatactccttgtcagcataaaacctttgtca 32555525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 28865045 - 28865158
Alignment:
Q  14 cagagacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttg 113  Q
    ||||||||||| | |||||||||||| |||||| |||| ||| || |||||||||||  ||||| || |  |||||||| ||||||||| ||||||||||    
T  28865045 cagagacctaacagcaagtctcccgcaaccacaaaacaacttcatcgaggaagatgagtcagttctttaaaaagagcaacacttcgttgagacgagtttg 28865144  T
Q  114 gggatattgatttt 127  Q
     ||||||| |||||    
T  28865145 aggatattaatttt 28865158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 2464892 - 2464820
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  2464892 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 2464820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 32640509 - 32640443
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacct 204  Q
    ||||||||||| | ||||||||||||||||  ||||||||| |||||||||  ||||||||||||||    
T  32640509 atattgatttttggttcaaggaccaaagtgaccattttctactttcactttggtccctgtgacacct 32640443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 34173503 - 34173403
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||| | ||||  ||||||||||  ||||||||| ||||| |||| ||||||||| |||| || | | ||||||||| ||||| |||||||    
T  34173503 ggatattgatttttggttcagagaccaaagtgatcattttctactttcagtttagtccctgtgataccttatgcaccttgtcagcacaaaacatttgtca 34173404  T
Q  236 c 236  Q
    |    
T  34173403 c 34173403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 35538062 - 35538179
Alignment:
Q  28 caagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgatttt 127  Q
    |||||||| ||| |||||| |||| |||| ||| |||||||||| |||||||| | || |||||| ||||   |||||| |||||||| |||||||||||    
T  35538062 caagtctctcgcaaccacagaacaactttgttgtggaagatgactcagtttttaatgacgagcaacactt---tgggacaagtttggg-atattgatttt 35538157  T
Q  128 tggttcatggatattgattttc 149  Q
       || ||||||||||||||||    
T  35538158 caatttatggatattgattttc 35538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 545938 - 546008
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||||||||||||||   |||||||| |||||||||  ||| ||||||||||||||    
T  545938 atattgatttttggttcaaggaccaaagtgactattttctactttcactttggtccttgtgacacctcata 546008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 8074671 - 8074601
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  | ||||||||||||||||    
T  8074671 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtacctgtgacacctcata 8074601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 23773477 - 23773511
Alignment:
Q  196 gtgacacctcatactctttgtcagcataaaacctt 230  Q
    |||||||||||||||||||||||||||||||||||    
T  23773477 gtgacacctcatactctttgtcagcataaaacctt 23773511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 25590651 - 25590581
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | ||||  ||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  25590651 atattgatttttggttcagagaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 25590581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 40611481 - 40611411
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| ||||| |||||  ||||||||| |||||||||  ||||||||||||||||||    
T  40611481 atattgatttttggttcagggacccaagtgaccattttctactttcactttggtccctgtgacacctcata 40611411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 13651041 - 13651134
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgaca-----cctcatactctttgtcagcataa 224  Q
    ||||||||||||||| |||| |||| ||||||  |||||| || |||||||||| |||||||||||     | |||||||| ||||||||||||    
T  13651041 ggatattgattttcggttcagggactaaagtgaccattttttactttcactttagtccctgtgacatgtcacgtcatactccttgtcagcataa 13651134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 28591029 - 28591085
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  28591029 ttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 28591085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 35538216 - 35538271
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaa 226  Q
    |||||||| |||||||||| ||  |||||||||||||||||||| | |||||||||    
T  35538216 attttctactttcactttagtctttgtgacacctcatactctttcttagcataaaa 35538271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 4593081 - 4593012
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  |||||||| |||||||||    
T  4593081 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtg-cacctcata 4593012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 8075735 - 8075805
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||| | |||||||||  ||| ||||||||||||||    
T  8075735 atattgatttttggttcagggaccaaagtgatcattttcgactttcactttggtccttgtgacacctcata 8075805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 14889990 - 14889920
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| ||| |||||  ||||| ||||||||||||    
T  14889990 atattgatttttggttcagggaccaaagtgaccattttctacttttactttggtccctatgacacctcata 14889920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 21069498 - 21069444
Alignment:
Q  170 cattttctattttcactttaatccctgtgacacctcatactctttgtcagcataa 224  Q
    ||||||||| |||||||||||||| | |||||| |||||||| |||||| |||||    
T  21069498 cattttctactttcactttaatccatatgacacgtcatactccttgtcaacataa 21069444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 31946932 - 31946986
Alignment:
Q  135 tggatattgattttcgcttcaaggaccaaagtggacattttctattttcacttta 189  Q
    |||||||||||||||| |||| |||||||||||  |||||| || ||||||||||    
T  31946932 tggatattgattttcgattcagggaccaaagtgaccattttttactttcacttta 31946986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 40612561 - 40612631
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| ||||||||||   ||||||||| |||||||||  ||| ||||||||||||||    
T  40612561 atattgatttttggttcagggaccaaagtaaccattttctactttcactttggtccttgtgacacctcata 40612631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 544836 - 544799
Alignment:
Q  171 attttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  544836 attttctactttcactttgatccctgtgacacctcata 544799  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 9537265 - 9537193
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| ||| |||||||   |||||||| |||||||||| || ||||||||| |||||    
T  9537265 ggatattgatttttgattcagggatcaaagtgactattttctactttcactttagtcactgtgacacatcata 9537193  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 19186129 - 19186193
Alignment:
Q  156 aggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagc 220  Q
    ||||||||||||   ||||| || |||||||||  |||||||||||| |||||||| ||||||||    
T  19186129 aggaccaaagtgactattttttactttcacttttgtccctgtgacacgtcatactccttgtcagc 19186193  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 29188185 - 29188295
Alignment:
Q  29 aagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttggggatattgattttt 128  Q
    |||||| |||| |||||| |||| ||| || |||||||||||||||||| |||||||||| ||| | ||| |||||||||||||  | |||||||||||     
T  29188185 aagtcttccgcaaccacaaaacagcttcatggaggaagatgacccagttcttgacgaagaacaacatttcattgggacgagtttaagaatattgattttc 29188284  T
Q  129 ggttcatggat 139  Q
    |||||| ||||    
T  29188285 ggttcagggat 29188295  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 36827355 - 36827456
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||| |||| |||||||| |   |||||||||||||||||||| ||||||||| || |||  ||| || |||||||||||| |||||||    
T  36827355 ggatattgattttcgattcagggaccaaaataatcattttctattttcactttagtccctgtgatacttcacgctccttctcagcataaaacatttgtca 36827454  T
Q  236 ca 237  Q
    ||    
T  36827455 ca 36827456  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 55389371 - 55389441
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  55389371 atattgattttcggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 55389441  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 2591847 - 2591776
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||||||| |||||| ||||||||||||  ||||| || |||||||||| ||| ||||||||||||||    
T  2591847 gatattgatttttgcttcagggaccaaagtggcaattttttactttcactttagtccatgtgacacctcata 2591776  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 48574359 - 48574431
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||| ||| | ||||||||| ||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  48574359 ggatattgaattttggttcaaggactaaagtgaccattttctactttcactttggtccctgtgacacctcata 48574431  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 55388282 - 55388211
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcat 207  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| |||||||||  |||||||||||| ||||    
T  55388282 ggatattgatttttggttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacatcat 55388211  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 48573206 - 48573136
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| ||| |||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  48573206 atattgatttttggttcatggatcaaagtgaccattttctactttcactttggtccctgtgacacctcata 48573136  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 48808593 - 48808523
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| |||||||||||  ||||||||| |||||||||  || |||||||||||||||    
T  48808593 atattgatttttggttcagggaccaaagtgaccattttctactttcactttggtctctgtgacacctcata 48808523  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 17700739 - 17700670
Alignment:
Q  139 tattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||   |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  17700739 tattgattttttgttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 17700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 36279159 - 36279103
Alignment:
Q  152 ttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||| |||||||||||  ||||||||| |||||||||  ||||||||||||||||||    
T  36279159 ttcagggaccaaagtgaccattttctactttcactttggtccctgtgacacctcata 36279103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 3671274 - 3671180
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtca 235  Q
    ||||||||||||||| |||| ||||||||       ||||||| |||||||||| |||| ||||||  |||||| | ||||||||||||||| | |||||    
T  3671274 ggatattgattttcggttcagggaccaaa-------ttttctactttcactttagtccccgtgacatgtcataccccttgtcagcataaaacatgtgtca 3671182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 6986845 - 6986883
Alignment:
Q  170 cattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  6986845 cattttctattttcactttaatctctatgacacctcata 6986883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 45600859 - 45600925
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacac 202  Q
    ||||||||||||| | ||||||||| ||| ||| |||||| || ||||||||| ||| |||||||||    
T  45600859 ggatattgatttttggttcaaggactaaactggccattttttactttcactttgatctctgtgacac 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 48809557 - 48809627
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||| | |||| ||| |||||||  ||||||||| |||||||||| ||| | ||||||||||||    
T  48809557 atattgatttttggttcatggatcaaagtgaccattttctactttcactttagtccttctgacacctcata 48809627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 20464312 - 20464243
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctc 205  Q
    ||||||||||||| | |||| |||||||||||  ||||||||| ||||| |||| || |||||| |||||    
T  20464312 ggatattgatttttgattcatggaccaaagtgaccattttctactttcattttagtctctgtgatacctc 20464243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 40206118 - 40206029
Alignment:
Q  143 gattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttg 232  Q
    |||||||| ||||||||||||||||  |||||| || ||||||||||  || ||||||| ||||  | | ||||||||| ||||| ||||    
T  40206118 gattttcggttcaaggaccaaagtgaccattttatactttcactttagcccttgtgacaactcacgcaccttgtcagcacaaaacatttg 40206029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 52318217 - 52318289
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    |||||||| |||| | |||| |||||||||||  ||||||||| |||||||||   || ||||||||||||||    
T  52318217 ggatattgttttttggttcatggaccaaagtgaccattttctactttcactttggaccttgtgacacctcata 52318289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 53957896 - 53957824
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcata 208  Q
    ||||||||||||| | |||| |||| |||||   ||||||||| |||||||||  |||| |||||||||||||    
T  53957896 ggatattgatttttggttcatggactaaagtaatcattttctactttcactttggtccccgtgacacctcata 53957824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 53957901 - 53957873
Alignment:
Q  110 tttggggatattgatttttggttcatgga 138  Q
    |||||||||||||||||||||||||||||    
T  53957901 tttggggatattgatttttggttcatgga 53957873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 142596 - 142488
Alignment:
Q  18 gacctaaaaacaagtctcccgcgaccacataacatctttattgaggaagatgacccagtttttgacgaagagcaatacttcgttgggacgagtttgggga 117  Q
    ||||||| | ||||||||| |||||||||||||| ||| |||||| |||| ||| || || |||||||||||||| | || ||| |||||||||||| ||    
T  142596 gacctaacatcaagtctcctgcgaccacataacaacttcattgagaaagacgacacaattcttgacgaagagcaaca-tttgtttggacgagtttggaga 142498  T
Q  118 tattgatttt 127  Q
    ||||||||||    
T  142497 tattgatttt 142488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 30748233 - 30748149
Alignment:
Q  136 ggatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagc 220  Q
    ||||||||||||| | |||| |||||||| ||  |||||| || |||||||||| |||||||||||| |||||||| ||||||||    
T  30748233 ggatattgatttttgattcagggaccaaattgaccattttttactttcactttagtccctgtgacacgtcatactccttgtcagc 30748149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 29856987 - 29856887
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagc-ataaaacctttgtca 235  Q
    |||||||||||||| ||||  ||||||| ||  ||||||||| || ||||||||||| ||||||||||||| | | |||||||| | ||||| |||||||    
T  29856987 gatattgattttcgattcagagaccaaaatgaccattttctacttccactttaatccttgtgacacctcatgcaccttgtcagcgaaaaaacatttgtca 29856888  T
Q  236 c 236  Q
    |    
T  29856887 c 29856887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 19600144 - 19600224
Alignment:
Q  156 aggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagcataaaacctttgtcac 236  Q
    ||||||||||||  ||||||||| |||||||||| |||||||||||  |||| | | |||||| || ||||| ||||||||    
T  19600144 aggaccaaagtgaccattttctactttcactttagtccctgtgacatttcatgcaccttgtcaccacaaaacatttgtcac 19600224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 6468733 - 6468801
Alignment:
Q  138 atattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcat 207  Q
    ||||||||||| | |||||| |||||| ||  ||||||||| |||||||||||||| |||| ||||||||    
T  6468733 atattgatttttggttcaagaaccaaattgatcattttctactttcactttaatccatgtg-cacctcat 6468801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 3189 - 3089
Alignment:
Q  137 gatattgattttcgcttcaaggaccaaagtggacattttctattttcactttaatccctgtgacacctcatactctttgtcagc-ataaaacctttgtca 235  Q
    |||||||||||||| ||||  ||||||| ||  ||||||||| || ||||||||||| ||||||||||||| | | |||||||| | ||||| |||||||    
T  3189 gatattgattttcgattcagagaccaaaatgaccattttctacttccactttaatccttgtgacacctcatgcaccttgtcagcgaaaaaacatttgtca 3090  T
Q  236 c 236  Q
    |    
T  3089 c 3089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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