View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_50 (Length: 250)
Name: NF10273_high_50
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49320530 - 49320294
Alignment:
| Q |
1 |
aaaaccaactttcttgtgagctctattaaaagttgaaattccaaggtataatcataaaaatgaaacgttagtatatcgggagagcatgttcgacttatca |
100 |
Q |
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| T |
49320530 |
aaaaccaactttcttgtgagctctattaaaagttgaaattccaaggtatattcataaaaatgaaacgttagtatatcgggagagcatgttcgacttatca |
49320431 |
T |
|
| Q |
101 |
cgaattgaagatgatattattatatgatcatcaatgtcaatgttactgataaaatttcattttccgnnnnnnnnnnnnnaataaaagaagatagctattg |
200 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| |
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| T |
49320430 |
cgaattgaagatgaaattgttatatgatcatcaatgtcaatgttactgataaaatttcattttccttattatttttttt--taataaaagatagctattg |
49320333 |
T |
|
| Q |
201 |
acaacacacctagaattagtataataatctctctccttt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49320332 |
acaacacacctagaattagtataataatctctctccttt |
49320294 |
T |
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