View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_51 (Length: 249)
Name: NF10273_high_51
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 47242901 - 47243129
Alignment:
| Q |
19 |
gcaatgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaacagagagatgaaggg |
118 |
Q |
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| T |
47242901 |
gcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaacagagagatgaaggg |
47243000 |
T |
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| Q |
119 |
tttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacattctccatata |
218 |
Q |
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| T |
47243001 |
tttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacattctccatata |
47243100 |
T |
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| Q |
219 |
accaaccattggtcttctctgcttctcca |
247 |
Q |
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| T |
47243101 |
accaaacattggtcttctctttttctcca |
47243129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 47249730 - 47249949
Alignment:
| Q |
19 |
gcaatgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaacagagagatgaaggg |
118 |
Q |
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| T |
47249730 |
gcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatctgtcaatgtatgaaactgacagatgaagtg |
47249829 |
T |
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| Q |
119 |
tttctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacattctccatata |
218 |
Q |
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| T |
47249830 |
tctcgggaagaagcttgtattcatctgcaacctcaactaaccaatcaaccaatgtccccctcatgtttgatgaaatgcctctctgaacattctcaagata |
47249929 |
T |
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| Q |
219 |
accaaccattggtcttctct |
238 |
Q |
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| T |
47249930 |
accaaccattggtcttctct |
47249949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 47254161 - 47254377
Alignment:
| Q |
22 |
atgagcatggatgaaacaccaagtaactgaagcttagatctaatgataggttggttagataagaatctatcaatgtatgaaacagagagatgaagggttt |
121 |
Q |
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||||||||||||||||||||||| || |||||||||||||| ||| || | || || | |||||| |||||||||||||||| ||||||||||||| |
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| T |
47254161 |
atgagcatggatgaaacaccaagcaattgaagcttagatctgttgacagactcattggacaggaatctgtcaatgtatgaaacagcaagatgaagggttt |
47254260 |
T |
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| Q |
122 |
ctggaagaagcgtgtattcatctgcaacctcaaccaaccaatcaaccaatgtgcccctcatgtttgatgtaatgcctctttgaacattctccatataacc |
221 |
Q |
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|| |||||| ||||||| || ||||||||||||||||||||||||| | | || ||||| || | |||| ||||||||||| ||||| |||||||| |
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| T |
47254261 |
gagggagaagcttgtattcttcagcaacctcaaccaaccaatcaaccagtatccctctcatattagcagtaacacctctttgaactttctcaatataacc |
47254360 |
T |
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| Q |
222 |
aaccattggtcttctct |
238 |
Q |
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|| |||||||||||||| |
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| T |
47254361 |
aatcattggtcttctct |
47254377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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