View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_54 (Length: 239)
Name: NF10273_high_54
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2198222 - 2198443
Alignment:
| Q |
1 |
cattctccgcttaacttaaccatttttctcttcgcgatcgttgttgagacatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggcagcaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2198222 |
cattctccgcttaacttaaccatttttctcttcgctatcgttattgagccatggcgcaggaaagattcatcattgaggttgaaaaagcgaaggcagcaac |
2198321 |
T |
|
| Q |
101 |
ggaggataaaccttcaagaggacctgcttatcgtagcatcttcgctaaagatggttttcctcctcctattcctggtcttgatagttgctgggatgttttt |
200 |
Q |
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||||||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2198322 |
ggaggataaaccttcaagaggacctgcgtatcgcagtatcttcgctaaggatggatttcctcctcctattcctggtcttgatagttgctgggatgttttt |
2198421 |
T |
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| Q |
201 |
cggttagtttcgatgcaaatca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2198422 |
cggttagtttcgatgcaaatca |
2198443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2210437 - 2210646
Alignment:
| Q |
1 |
cattctccgcttaacttaaccatttttctcttcgcgatcgttgttgagacatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggcagcaac |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2210437 |
cattctccgcttaacttaaccatttttctcatcgcgatcatcgttgagccatggcgcagaaaagattcatcattgaggttgaaaaagcgaaggaagcaac |
2210536 |
T |
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| Q |
101 |
ggaggataaaccttcaagaggacctgcttatcgtagcatcttcgctaaagatggttttcctcctcctattcctggtcttgatagttgctgggatgttttt |
200 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2210537 |
ggaagataaaccttcaagaggacctgcgtatcgtagcatcttcgctaaagatggttttcctcctcctattcttggtcttgatagttgctgggatgttttt |
2210636 |
T |
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| Q |
201 |
cggttagttt |
210 |
Q |
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|||||||||| |
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| T |
2210637 |
cggttagttt |
2210646 |
T |
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