View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_high_55 (Length: 239)

Name: NF10273_high_55
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_high_55
NF10273_high_55
[»] chr6 (1 HSPs)
chr6 (30-191)||(21910797-21910958)
[»] chr1 (1 HSPs)
chr1 (2-35)||(47780494-47780527)
[»] chr7 (2 HSPs)
chr7 (3-34)||(973067-973098)
chr7 (1-34)||(31638759-31638792)
[»] chr4 (3 HSPs)
chr4 (3-38)||(24131265-24131300)
chr4 (3-34)||(28541580-28541611)
chr4 (3-35)||(1044691-1044723)
[»] chr2 (1 HSPs)
chr2 (1-35)||(1789325-1789359)
[»] chr5 (3 HSPs)
chr5 (3-36)||(33656335-33656368)
chr5 (3-35)||(21146949-21146981)
chr5 (3-35)||(43319128-43319160)
[»] chr3 (2 HSPs)
chr3 (3-36)||(12734133-12734166)
chr3 (1-33)||(40246727-40246759)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 21910797 - 21910958
Alignment:
Q  30 ctaaattttgaaaacgctcaaaattaaaatttctcccaattctattattatatagacctgactataatatccacaacgaaattaagctccaaaatttaaa 129  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21910797 ctaaatttttaaaacactcaaaattaaaatttctcccgattctattattatatagacctgactataatatccataacgaaattaagctccaaaatttaaa 21910896  T
Q  130 aatcatgctcggccaggaaaggagaacaaatcatttttctttcccatcaaaattagccactc 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||    
T  21910897 aatcatgctcggccaagaaaggagaacaaatcatttttcttttgcatcaaaattagccactc 21910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 47780527 - 47780494
Alignment:
Q  2 tcttagaatcatgatccaatacaccctcctaaat 35  Q
    ||||||||||||||||||||||||||||||||||    
T  47780527 tcttagaatcatgatccaatacaccctcctaaat 47780494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 973098 - 973067
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  973098 cttagaatcatgatccaatacaccctcctaaa 973067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31638792 - 31638759
Alignment:
Q  1 ctcttagaatcatgatccaatacaccctcctaaa 34  Q
    |||||||||||||||| |||||||||||||||||    
T  31638792 ctcttagaatcatgattcaatacaccctcctaaa 31638759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 24131265 - 24131300
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaatttt 38  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24131265 cttagaatcatgatccaatacaccctccttaatttt 24131300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 28541611 - 28541580
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  28541611 cttagaatcatgatccaatacaccctcctaaa 28541580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 1044723 - 1044691
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaat 35  Q
    ||||||||||||||||||||||||| |||||||    
T  1044723 cttagaatcatgatccaatacacccccctaaat 1044691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1789359 - 1789325
Alignment:
Q  1 ctcttagaatcatgatccaatacaccctcctaaat 35  Q
    ||||||||||||||||||||||||||| |||||||    
T  1789359 ctcttagaatcatgatccaatacacccccctaaat 1789325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 33656335 - 33656368
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaatt 36  Q
    |||| |||||||||||||||||||||||||||||    
T  33656335 cttaaaatcatgatccaatacaccctcctaaatt 33656368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 21146981 - 21146949
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaat 35  Q
    ||||||||||||||||||||||||| |||||||    
T  21146981 cttagaatcatgatccaatacacccccctaaat 21146949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 43319160 - 43319128
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaat 35  Q
    ||||||||||||||||||||||||| |||||||    
T  43319160 cttagaatcatgatccaatacacccccctaaat 43319128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 12734133 - 12734166
Alignment:
Q  3 cttagaatcatgatccaatacaccctcctaaatt 36  Q
    ||||||||||||||||||||||||| ||||||||    
T  12734133 cttagaatcatgatccaatacacccccctaaatt 12734166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40246759 - 40246727
Alignment:
Q  1 ctcttagaatcatgatccaatacaccctcctaa 33  Q
    ||||||||||||||||||||||||||| |||||    
T  40246759 ctcttagaatcatgatccaatacacccccctaa 40246727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University