View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_57 (Length: 239)
Name: NF10273_high_57
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_57 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33763685 - 33763908
Alignment:
| Q |
1 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatacctctcttaa |
100 |
Q |
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| T |
33763685 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatacctctcttaa |
33763784 |
T |
|
| Q |
101 |
gaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcaccatcactatttgatttgcacaacttaacaagctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33763785 |
gaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcaccatcactatttgatttgcacaacttcacaagctt |
33763884 |
T |
|
| Q |
201 |
agtatccaatgcagggtccattgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
33763885 |
agtatccaatgcagggtccattgt |
33763908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 33761633 - 33761797
Alignment:
| Q |
1 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatacctctcttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||| ||||||| |||||||||||| | |
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| T |
33761633 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaaggacttgttgatttaaccaaagtaagtttctgatcgatctgcaatatacctctcttga |
33761732 |
T |
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| Q |
101 |
gaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagca |
165 |
Q |
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| T |
33761733 |
gaagaaattgttggtaaaattcattatcaagaataaaagaagtcttctaatacaaaattgcagca |
33761797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33755368 - 33755247
Alignment:
| Q |
1 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatacctctcttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| |||||| | |
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| T |
33755368 |
ttaacaaacttatcaccatttgaagtaaaattagacacaaaatgacttgttgatttatccaaagcaagttgcttatcaacctgctatatacatctcttca |
33755269 |
T |
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| Q |
101 |
gaagaatctgcttgtaaaattc |
122 |
Q |
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|||||||||| ||||||||||| |
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| T |
33755268 |
gaagaatctgtttgtaaaattc |
33755247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 33755668 - 33755758
Alignment:
| Q |
1 |
ttaacaaacttatcaccatttgaagcaaaattagacacaaaagtacttgttgatttatccaaagcaagttgctgatcaatctgcattatac |
91 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| ||||| |
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| T |
33755668 |
ttaacaaacttctcgccatttgaagcaaaattagacacaaaaagacttgttgatttatccaaagtaagtttttgatcgatctgcaatatac |
33755758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 33758689 - 33758822
Alignment:
| Q |
88 |
atacctctcttaagaagaatctgcttgtaaaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagcaccatcactatttgatttgcaca |
187 |
Q |
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||||||||||| |||||||| || ||||||| ||| | ||||| | |||||| ||||| ||||||||||||| |||||||||| ||||||||| |||| |
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| T |
33758689 |
atacctctcttcagaagaatttgtttgtaaatttcttgatcaataacaaaagaggtattttgatccaaaaatgtagcaccatcaacatttgatttacaca |
33758788 |
T |
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| Q |
188 |
acttaacaagcttagtatccaatgcagggtccat |
221 |
Q |
| |
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|||| ||||| |||| |||||| | ||||||||| |
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| T |
33758789 |
acttcacaagtttagcatccaacgtagggtccat |
33758822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 33755790 - 33755825
Alignment:
| Q |
134 |
taaaagaagtattctgatccaaaaatgcagcaccat |
169 |
Q |
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| T |
33755790 |
taaaagaagtattctaatccaaaaatgcagcaccat |
33755825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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