View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_6 (Length: 479)
Name: NF10273_high_6
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 42121116 - 42121567
Alignment:
| Q |
18 |
tttgtttcctctgtagtgttgtagctcatgccaatacaatctcggtcgttagatggattagtccaatggtcgagattgagttggaccagcagcagggttg |
117 |
Q |
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| T |
42121116 |
tttgtttcctctgtagtgttgtagctcatgccaatacaatctcggtcgttagatggattagtccaatggtcgagattgagttggaccagcagcagggttg |
42121215 |
T |
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| Q |
118 |
tggataatccagatggcgataatttccttgcatagagaatctaagcgtaacaacggtactaggaaaatagttaattttaaaggaaaacagaaacaacttt |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42121216 |
tggataatccagatggcgataatttctttgcatagagaatctaagcgtaacaacggtactaggaaaatagttaattttaaaggaaaacagaaacaacttt |
42121315 |
T |
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| Q |
218 |
atttattttctccatttccacttgggtcaggattttcactgccttaccgtataaggaatgcctttaaatattctcaacattggtgaaggctcactctttg |
317 |
Q |
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| T |
42121316 |
atttattttctccatttccacttgggtcaggattttcactgccttaccgtataaggaatgcctttaagtattctcaacattggtgaaggctcactctttg |
42121415 |
T |
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| Q |
318 |
aaactataaacgtgcaatcgtaaatgaatggaatgaatgtccgtgtatgtgttactgctttgacaaaaccctgcagaaagattatcagtcgtgaaagata |
417 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42121416 |
aaactataaacgtgcaatcgtaaatgactggaatgaatgtccgtgtatgtgttacagctttgacaaaaccctgcagaaagattatcagtcgtgaaagata |
42121515 |
T |
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| Q |
418 |
attatgagctaaaacaaaatcagaatgtgtaatatgtagtttgaaacctatg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42121516 |
attatgagctaaaacaaaatcagaatgtgtaatatgtagtttgaaacctatg |
42121567 |
T |
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