View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_61 (Length: 234)
Name: NF10273_high_61
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_61 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45646603 - 45646370
Alignment:
| Q |
1 |
cacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagac |
100 |
Q |
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| T |
45646603 |
cacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagac |
45646504 |
T |
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| Q |
101 |
tattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgtacctgctgcagtgattgcaggattcaatagt |
200 |
Q |
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| T |
45646503 |
tattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgtacctgctgcagtgattgcaggattcaatagt |
45646404 |
T |
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| Q |
201 |
caattgcaaggaacagtgaatattcctcttactt |
234 |
Q |
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| T |
45646403 |
caattgcaaggaacagtgaatattcctcttactt |
45646370 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 38013360 - 38013535
Alignment:
| Q |
1 |
cacctcacactcacccacgtgcaactgagattgtttatgttcttgaaggtcaattagatgttgggttcataacaacagctaatgttttgatatcaaagac |
100 |
Q |
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||||||||||||||||||| || || ||| | || | ||| |||||||| ||| ||||||||||||||||||| ||||| ||||| | ||||||||||| |
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| T |
38013360 |
cacctcacactcacccacgcgccaccgaggtggtgtttgtgcttgaaggccaactagatgttgggttcataaccacagccaatgtgctcatatcaaagac |
38013459 |
T |
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| Q |
101 |
tattgttaagggtgaaacatttgtgtttcctaaaggattggttcatttccaaaagaacagtggttatgtacctgct |
176 |
Q |
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| T |
38013460 |
tattagcaagggtgagatatttgtgttcccaaaaggcttagttcacttccaaaagaacaatgccaatgtacctgct |
38013535 |
T |
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