View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_63 (Length: 228)
Name: NF10273_high_63
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 26833367 - 26833227
Alignment:
| Q |
74 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
173 |
Q |
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| T |
26833367 |
gaaattgacatataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaatt |
26833268 |
T |
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| Q |
174 |
cttgatgattcaactgatcctacaattaaggtatctatgct |
214 |
Q |
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| T |
26833267 |
cttgatgattcaactgatcctacaattaaggtatctatgct |
26833227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 83 - 214
Target Start/End: Complemental strand, 26786570 - 26786439
Alignment:
| Q |
83 |
atataaattgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgat |
182 |
Q |
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| T |
26786570 |
atatatatggttctaaatgtaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgat |
26786471 |
T |
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| Q |
183 |
tcaactgatcctacaattaaggtatctatgct |
214 |
Q |
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| T |
26786470 |
tcaactgacccaacaatcaaggtatatatgct |
26786439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 26823436 - 26823319
Alignment:
| Q |
90 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
189 |
Q |
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| T |
26823436 |
ttgttcatattgcaggtttatcagttatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26823337 |
T |
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| Q |
190 |
atcctacaattaaggtat |
207 |
Q |
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| T |
26823336 |
acccaacaatcaaggtat |
26823319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 26799345 - 26799228
Alignment:
| Q |
90 |
ttgttcaaaatgcaggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactg |
189 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
26799345 |
ttgttcaaattgcaggtttatcagctatcaattggtgctgcatgtgaactctcttggccttctgatagaatcatcatacaaattcttgatgattccactg |
26799246 |
T |
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| Q |
190 |
atcctacaattaaggtat |
207 |
Q |
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| T |
26799245 |
acccaaccatcaaggtat |
26799228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 41545969 - 41546059
Alignment:
| Q |
103 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcc |
193 |
Q |
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| T |
41545969 |
aggtgtatcaattatcaattggagctgcatgtgggttatcatggccatctgatagaattattattcaagttcttgatgactcaacagatcc |
41546059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 41916992 - 41917095
Alignment:
| Q |
103 |
aggtttatcagttatcaattggtgctgcatgtggactctcatggccttctgataggatcatcatacaaattcttgatgattcaactgatcctacaattaa |
202 |
Q |
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|||||||||| || |||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| || ||||| || ||||| || |
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| T |
41916992 |
aggtttatcaattgtcaattggagctgcatgtggtctttcatggccttctgataggatcattatacaagttcttgatgactccactgacccaacaatcaa |
41917091 |
T |
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| Q |
203 |
ggta |
206 |
Q |
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|||| |
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| T |
41917092 |
ggta |
41917095 |
T |
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