View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10273_high_64 (Length: 228)
Name: NF10273_high_64
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38549543 - 38549334
Alignment:
| Q |
1 |
agtataatttttagagagtttcttttcccatctttcaagcttcttccatgtctacgacacttc-ggattatataatctaaaatgtgtaaaaatgnnnnnn |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38549543 |
agtataatttttagagagtttcttttcccatctttcaagcttattccatgtctacgacacttttggattatataatctaaaatgtgtaaaaa--aaaaaa |
38549446 |
T |
|
| Q |
100 |
nnnngaaagaaaatgtgtaaaaatatttaaaacttcttcttttattagattttaaaatttgaattagggcgcaaagtttggatgactctaatttgtagga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
38549445 |
aattgaaagaaaatgtgtaaaaatatttaaaacttcttcttttattagattttaaaatttgaattagggagcaaagtttggatgactctaatttttagga |
38549346 |
T |
|
| Q |
200 |
tacaaagagatt |
211 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38549345 |
tacaaagagatt |
38549334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 25790364 - 25790286
Alignment:
| Q |
16 |
gagtttcttttcccatctttcaagcttcttccatgt-ctacgacacttcggattatataatctaaaatgtgtaaaaatg |
93 |
Q |
| |
|
||||||||||||||| ||||||||||||| || || |||| ||| || ||||||||||||| ||| ||||||||||| |
|
|
| T |
25790364 |
gagtttcttttcccacctttcaagcttctcgcaagtcctacaacattttagattatataatctgaaaggtgtaaaaatg |
25790286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University