View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_high_66 (Length: 227)

Name: NF10273_high_66
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_high_66
NF10273_high_66
[»] chr4 (13 HSPs)
chr4 (1-227)||(42756673-42756901)
chr4 (60-218)||(13909799-13909957)
chr4 (60-218)||(24180591-24180749)
chr4 (60-227)||(11560217-11560383)
chr4 (76-227)||(24182429-24182580)
chr4 (60-223)||(12576835-12576998)
chr4 (90-227)||(35648520-35648657)
chr4 (90-141)||(22681162-22681213)
chr4 (70-128)||(2041166-2041224)
chr4 (67-216)||(28474811-28474961)
chr4 (68-114)||(50159145-50159191)
chr4 (74-143)||(13239976-13240045)
chr4 (67-139)||(285179-285251)
[»] scaffold1315 (1 HSPs)
scaffold1315 (1-211)||(1275-1487)
[»] scaffold1293 (1 HSPs)
scaffold1293 (1-211)||(584-796)
[»] chr2 (13 HSPs)
chr2 (1-225)||(6466919-6467145)
chr2 (60-218)||(45661111-45661269)
chr2 (60-218)||(5788011-5788169)
chr2 (60-218)||(45662556-45662713)
chr2 (76-227)||(14872722-14872873)
chr2 (60-227)||(45053988-45054155)
chr2 (1-59)||(20442863-20442921)
chr2 (72-141)||(41752905-41752974)
chr2 (95-226)||(36720074-36720205)
chr2 (176-222)||(25546950-25546996)
chr2 (92-218)||(41753953-41754079)
chr2 (90-127)||(39403381-39403418)
chr2 (77-216)||(45058390-45058530)
[»] chr8 (16 HSPs)
chr8 (60-218)||(43215467-43215625)
chr8 (76-227)||(18431492-18431643)
chr8 (75-218)||(45528202-45528345)
chr8 (60-218)||(15275927-15276084)
chr8 (60-218)||(15456296-15456453)
chr8 (90-227)||(15276763-15276900)
chr8 (90-227)||(15457132-15457269)
chr8 (92-162)||(38291836-38291906)
chr8 (90-163)||(19263301-19263374)
chr8 (72-141)||(23140535-23140604)
chr8 (67-120)||(38291332-38291385)
chr8 (97-227)||(760675-760805)
chr8 (72-140)||(13758981-13759049)
chr8 (176-227)||(14715285-14715336)
chr8 (90-148)||(20874610-20874668)
chr8 (60-165)||(42797046-42797151)
[»] scaffold0169 (1 HSPs)
scaffold0169 (67-227)||(5120-5279)
[»] chr3 (10 HSPs)
chr3 (76-227)||(12125429-12125580)
chr3 (60-206)||(9265297-9265443)
chr3 (60-218)||(9266725-9266882)
chr3 (76-227)||(6436845-6436996)
chr3 (76-218)||(9262779-9262921)
chr3 (90-163)||(50419-50492)
chr3 (90-227)||(20934184-20934321)
chr3 (68-127)||(14240497-14240556)
chr3 (75-216)||(6087136-6087277)
chr3 (171-227)||(431975-432031)
[»] scaffold0159 (1 HSPs)
scaffold0159 (60-218)||(32384-32542)
[»] chr6 (9 HSPs)
chr6 (85-227)||(11554328-11554470)
chr6 (85-227)||(4852808-4852950)
chr6 (1-59)||(24360867-24360925)
chr6 (93-163)||(2970421-2970491)
chr6 (92-168)||(18089937-18090013)
chr6 (67-218)||(34515068-34515220)
chr6 (96-162)||(26595896-26595962)
chr6 (95-227)||(24397916-24398047)
chr6 (59-163)||(29214195-29214299)
[»] chr7 (10 HSPs)
chr7 (75-227)||(17474599-17474751)
chr7 (75-227)||(17578463-17578615)
chr7 (68-205)||(6202346-6202483)
chr7 (75-227)||(17510083-17510235)
chr7 (75-227)||(17542979-17543131)
chr7 (69-218)||(38788064-38788213)
chr7 (60-129)||(48553243-48553312)
chr7 (72-219)||(24708450-24708597)
chr7 (98-141)||(27938832-27938875)
chr7 (152-226)||(42078967-42079043)
[»] scaffold0061 (1 HSPs)
scaffold0061 (75-170)||(45583-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (75-170)||(153109-153204)
[»] chr1 (4 HSPs)
chr1 (74-227)||(31089469-31089623)
chr1 (76-227)||(16852891-16853042)
chr1 (100-148)||(11976911-11976959)
chr1 (90-227)||(43387042-43387179)
[»] scaffold0191 (1 HSPs)
scaffold0191 (60-165)||(12247-12352)
[»] scaffold0050 (1 HSPs)
scaffold0050 (69-165)||(10561-10657)
[»] scaffold1312 (1 HSPs)
scaffold1312 (90-216)||(2-128)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-127)||(46261-46321)
[»] scaffold0284 (1 HSPs)
scaffold0284 (93-191)||(7539-7637)
[»] chr5 (3 HSPs)
chr5 (90-128)||(9048715-9048753)
chr5 (101-198)||(38012839-38012936)
chr5 (90-227)||(38015875-38016012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (90-163)||(185-258)
[»] scaffold0074 (1 HSPs)
scaffold0074 (95-227)||(30839-30970)
[»] scaffold0012 (1 HSPs)
scaffold0012 (176-227)||(95951-96002)
[»] scaffold1804 (1 HSPs)
scaffold1804 (104-142)||(1034-1072)
[»] scaffold0211 (1 HSPs)
scaffold0211 (75-112)||(16017-16054)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42756673 - 42756901
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||| ||||||||||||||    
T  42756673 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgacttgaatcatcacatttggcttagagaaaccccataagtgagat 42756772  T
Q  99 tgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 198  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  42756773 tgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtagaagttt 42756872  T
Q  199 tactcacaaatgacacattaccatctctc 227  Q
    |||||||||||||||||||| ||||||||    
T  42756873 tactcacaaatgacacattaacatctctc 42756901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 13909957 - 13909799
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| ||||| ||||||||   ||||||||| | ||| | ||||||||    
T  13909957 atcattacatttgtctaagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatat 13909858  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || | |||| || |||||| ||| || ||||||| ||| |||||||    
T  13909857 gttgctcaatatttatttttgcgtcaaatgtaaaaggttaactcacacatgtcacatta 13909799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 24180591 - 24180749
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||  |||||||||| |||| || |||| ||||||| |||| ||||| |||||||||||||   |||||||||| | ||||| | ||||||    
T  24180591 atcattacatttatctaagagaaaccccaaaaatgagtttgacactacattttcattcaaaaccttaagatattaggtatattggacatttcagttatat 24180690  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  24180691 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 24180749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 11560383 - 11560217
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    ||||| ||||||| ||||||||||| | | || ||  ||||| || |||||||||   |||||||||||||   | ||||||||||||| | || |||||    
T  11560383 atcatcgcatttgactaagagaaattctagaattggtattgaaactacatcttcacttaaaaccttaagacatcaagtatatttgtcatctcacgtatat 11560284  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
     ||| | ||| |||| |||||||||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  11560283 attg-tcaatatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatctctc 11560217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 24182429 - 24182580
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||||||| | ||||||||||||||||||||||||| |  ||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  24182429 aagagaaatccgacaagtgagattgacaccacatcttcacctgaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 24182528  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    | |||| | |||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  24182529 ttttgctttcaatgtagaagtttaacttacacatgacacattaacatatctc 24182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 12576835 - 12576998
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| ||||||||||||||||  |||| || ||||||||| |||| || || | ||||||| |||||||  |||||||||  ||||| | ||| ||||    
T  12576835 atcattacatttggctaagagaatccccacaaatgagattgagaccatattttgacccaaaactttaagacaataggtatatgggtcatctcactaatat 12576934  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatc 223  Q
    |||| | ||| |  | |||||||||||| ||| |||||| |||| |  ||||||||||| ||||    
T  12576935 gttgtttaatatccactcttgcatccaacgtaaaagtttaactcccctatgacacattatcatc 12576998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 35648520 - 35648657
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    ||||||||||||||||||||||| |   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||| | |||||    
T  35648520 aagtgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcttacaatg 35648619  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||||||| |||| |||| | ||||||||    
T  35648620 tagaagtttaactcacacatgaaacataaacatctctc 35648657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 22681162 - 22681213
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 141  Q
    |||||||||||||||||||||| || || ||||||||||||  |||||||||    
T  22681162 aagtgagattgacaccacatctccaccctaaaccttaagacattaggtatat 22681213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 2041224 - 2041166
Alignment:
Q  70 ttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaag 128  Q
    ||||||||||| || | || ||||||| | ||||||||||||||| |||||||||||||    
T  2041224 ttggctaagagcaaccacacaagtgagttggacaccacatcttcacccaaaaccttaag 2041166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 28474811 - 28474961
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgct 165  Q
    |||||| | |||||||| |||| || ||||||||||||||||||||||  ||||||||  |||||  || ||||||| | ||| | || |  ||||  ||    
T  28474811 catttgaccaagagaaaccccaaaaatgagattgacaccacatcttcactcaaaacctgaaagacattatgtatattagccatctcacattcatgtatct 28474910  T
Q  166 gaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacat 216  Q
     ||| |||| | |||| | |||||||||||||| ||||||| |||||||||    
T  28474911 caatatatacttttgctttcaatgtagaagtttaactcacacatgacacat 28474961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 50159191 - 50159145
Alignment:
Q  68 atttggctaagagaaatcccataagtgagattgacaccacatcttca 114  Q
    ||||| |||||||||| | ||||||| ||||||||||||||||||||    
T  50159191 atttgactaagagaaacctcataagtaagattgacaccacatcttca 50159145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 13239976 - 13240045
Alignment:
Q  74 ctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatattt 143  Q
    |||||||||| || | |||||||||||| | |||||||||  | |||| ||||||||| |||||||||||    
T  13239976 ctaagagaaaccctacaagtgagattgagatcacatcttcgcctaaaatcttaagactttaggtatattt 13240045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 285251 - 285179
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtat 139  Q
    ||||||||||||||||| | || || |||||| ||| ||| || || |||||||||||||||||  |||||||    
T  285251 catttggctaagagaaacctcacaaatgagatcgacgccatattttgatccaaaaccttaagacattaggtat 285179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1487 - 1275
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagat 98  Q
    |||| |||||||| ||||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| ||||||||||||||    
T  1487 aaaattaagacaataatttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaaccccataagtgagat 1388  T
Q  99 tgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 198  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  1387 tgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaacttatatgttgcacaatatatagtcttgcatccaatgtagaagttt 1288  T
Q  199 tactcacaaatga 211  Q
    |||||||||||||    
T  1287 tactcacaaatga 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 584 - 796
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagat 98  Q
    |||| |||||||| ||||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| ||||||||||||||    
T  584 aaaattaagacaataatttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaaccccataagtgagat 683  T
Q  99 tgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 198  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  684 tgacaccacatcttcatccaaaaccttaagactttagatatatttgtcatttaacttatatgttgcacaatatatagtcttgcatccaatgtagaagttt 783  T
Q  199 tactcacaaatga 211  Q
    |||||||||||||    
T  784 tactcacaaatga 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6467145 - 6466919
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagat 98  Q
    |||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||  |||||   |||||| ||||||||| |  |||||||||||    
T  6467145 aaaactaagataacaatttatcataatatttggagctccgagggatcctgtaatgacttggatcatcatatttggataagagaaacctgataagtgagat 6467046  T
Q  99 tgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 198  Q
    ||||||||||||| ||||||||| ||||||||  ||| |||||||||||||| | |||||| ||||| ||| |||| ||||| |||||||||||||||||    
T  6467045 tgacaccacatctccatccaaaaacttaagacattagttatatttgtcatttcatttatatcttgctcaatatatactcttggatccaatgtagaagttt 6466946  T
Q  199 tactcacaaatgacacattaccatctc 225  Q
    |||||| ||||||||||||| ||||||    
T  6466945 tactcataaatgacacattatcatctc 6466919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 45661269 - 45661111
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| ||||||| |||||||||||| |||| ||||| ||||| ||||||||  || ||||||| | ||| | ||||||||    
T  45661269 atcattacatttgtctaagagaaaccccataaatgagattgacactacattttcattcaaaatcttaagacattaagtatattggacatctcacttatat 45661170  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  45661169 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 45661111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 5788011 - 5788169
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    ||||||||||||| | ||||||||  ||||| || | ||| ||| |||||||  |  ||||||||||||||| |  ||||||||||||| | ||||||||    
T  5788011 atcattgcatttgaccaagagaaactccatacgtaaaattcacatcacatctaaactcaaaaccttaagactttgagtatatttgtcatctcacttatat 5788110  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| |||| |||| |||  ||||||||||||| | |||||  ||||||||||    
T  5788111 gttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacatta 5788169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 45662713 - 45662556
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| ||||||  ||||||||| |||| || ||||||||||||||||||||||| ||||| ||||||||  || ||||||| | ||| | |||||||     
T  45662713 atcattacatttgtttaagagaaa-cccacaattgagattgacaccacatcttcattcaaaatcttaagacattacgtatattggacatcttacttatac 45662615  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  45662614 gttgctcaatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 45662556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 14872873 - 14872722
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||||||| | ||||||||||||||||||||||||| | ||  |||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  14872873 aagagaaatccgacaagtgagattgacaccacatcttcacctaactccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 14872774  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    | |||| |||||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  14872773 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctc 14872722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 45053988 - 45054155
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| ||||| |||| |||| || ||||||||||||||||||||||| ||||| ||||||||   |||||||||    || | ||||||||    
T  45053988 atcattacatttgtctaagtgaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatat 45054087  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    |||||| ||| | || | |||| || |||||| ||| || ||||||| ||| ||||||| | ||||||    
T  45054088 gttgctcaatatttacttttgcgtcaaatgtaaaaggttaactcacacatgtcacattaacttctctc 45054155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20442921 - 20442863
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt 59  Q
    |||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  20442921 aaaattaagacaacagtttatcataatgattggagctctaagggagcctgtaatgactt 20442863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 41752905 - 41752974
Alignment:
Q  72 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 141  Q
    ||||||||||| |||||||| ||||||||||||||||| || | |||||||||||||||  |||||||||    
T  41752905 ggctaagagaattcccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtatat 41752974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 36720205 - 36720074
Alignment:
Q  95 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 194  Q
    ||||||||| |||||||||| |||||  ||| ||||  |||||||||   |||| | |||||||||||||| ||  |||| | |||||  || |||||||    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  195 gttttactcacaaatgacacattaccatctct 226  Q
     ||| |||||||  |||||||||| |||||||    
T  36720105 ttttaactcacacttgacacattaacatctct 36720074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 25546996 - 25546950
Alignment:
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccat 222  Q
    ||||||||||||||||||| ||| |||||||  ||||||||||||||    
T  25546996 tcttgcatccaatgtagaactttaactcacatttgacacattaccat 25546950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 41753953 - 41754079
Alignment:
Q  92 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgta 191  Q
    |||| ||| |||||||||||  || ||||||||||||||  | | |||||| ||||| | |||||||||||||| ||| | || |||| |||  ||||||    
T  41753953 gtgaaattcacaccacatctaaattcaaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgta 41754052  T
Q  192 gaagttttactcacaaatgacacatta 218  Q
     |||||| | | ||| |||||||||||    
T  41754053 taagtttaaatgacacatgacacatta 41754079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 39403381 - 39403418
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaa 127  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39403381 aagtgagattgacaccacatgttcatccaaaacattaa 39403418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 45058390 - 45058530
Alignment:
Q  77 agagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||| |||| || ||||||||||| ||||||||||  ||||||||  |||||  || ||||||| | ||| | ||||  ||||| || ||| ||||     
T  45058390 agagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggccatctcactttcatgtttctcaatatatac 45058489  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacat 216  Q
    | |||| |||||||||||||||| ||  ||| |||||||||    
T  45058490 ttttgcttccaatgtagaagtttaaccgacacatgacacat 45058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 43215467 - 43215625
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| ||||||| || ||||||| |||||||||||| |||| ||||| ||||||| ||||||  || ||||||| | ||| | ||||||||    
T  43215467 atcattacatttgtctaagaggaaccccataaatgagattgacactacattttcattcaaaaccgtaagacattaagtatattggacatctcacttatat 43215566  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || ||||||||| |||||| ||| || ||||||| ||| |||||||    
T  43215567 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatgtcacatta 43215625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 18431492 - 18431643
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    |||||||| |||| |||| |||| ||||||||||||  |||  |||||| |||||  |||||||||| ||||| | |  ||||||||||| ||| ||||     
T  18431492 aagagaaaccccacaagtaagatggacaccacatctctatctcaaacctgaagacattaggtatattggtcatctcaaatatatgttgctcaatatatac 18431591  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||  ||||||||| ||||||| ||||||||||| ||||||||    
T  18431592 tcttgcatcaaaattagaagtttaactcacacatgacacattaacatctctc 18431643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 45528345 - 45528202
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||| ||||    
T  45528345 taagagaaaccccacaagtgagatacacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaatatata 45528246  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
     || ||||||||| || ||| ||| ||||| | |||| ||||||    
T  45528245 ctcgtgcatccaacgttgaaatttaactcatacatgatacatta 45528202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 15275927 - 15276084
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| | ||||||||||||  |||||||||| | ||| | |||||||     
T  15275927 atcattacatttgtctaagagaaa-cccacaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatac 15276025  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    ||||||  || | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  15276026 gttgctcgatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 15276084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 15456296 - 15456453
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| |||| || ||||||||||||||||||||||| | ||||||||||||  |||||||||| | ||| | |||||||     
T  15456296 atcattacatttgtctaagagaaa-cccacaaatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatac 15456394  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    ||||||  || | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  15456395 gttgctcgatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 15456453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 15276763 - 15276900
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    ||||||||||||||||||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| |||| | |||| |||||||    
T  15276763 aagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatg 15276862  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||| ||| ||||||||||| ||| ||||    
T  15276863 tagaagtttaacttacacatgacacattaacatatctc 15276900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 15457132 - 15457269
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    ||||||||||||||||||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| |||| | |||| |||||||    
T  15457132 aagtgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatg 15457231  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||| ||| ||||||||||| ||| ||||    
T  15457232 tagaagtttaacttacacatgacacattaacatatctc 15457269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 38291906 - 38291836
Alignment:
Q  92 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgtt 162  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||||||||  | |||| |||||||||||    
T  38291906 gtgagattgacacgacatcttcatccaaaaccttaagacattaggtatattgataatttcacttatatgtt 38291836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 19263301 - 19263374
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 163  Q
    |||||||||||||||||||||| ||||| ||||||||||||  |||||||||  ||||| | |||||| |||||    
T  19263301 aagtgagattgacaccacatctccatcctaaaccttaagacattaggtatatgagtcatatcacttatttgttg 19263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 23140535 - 23140604
Alignment:
Q  72 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatat 141  Q
    ||||||||||| |||||||| ||| ||||||||||||| || | |||||||||||||||  |||||||||    
T  23140535 ggctaagagaattcccataaatgaaattgacaccacattttgacccaaaaccttaagacattaggtatat 23140604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 38291385 - 38291332
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaa 120  Q
    |||||| |||||||||||||||||| | ||||||||||||||||| ||||||||    
T  38291385 catttgactaagagaaatcccataaataagattgacaccacatctgcatccaaa 38291332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 227
Target Start/End: Complemental strand, 760805 - 760675
Alignment:
Q  97 attgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagt 196  Q
    ||||||||||||| ||||| |||||   ||||||  |||||||||| |||| || ||| |||||||| | ||  |||| ||||||||| |||||||| ||    
T  760805 attgacaccacatattcattcaaaatagtaagacattaggtatattagtcacttcactgatatgttgtttaaagtatattcttgcatcaaatgtagatgt 760706  T
Q  197 tttactcacaaatgacacattaccatctctc 227  Q
    || ||||| | ||||| ||||  ||||||||    
T  760705 ttaactcatacatgacgcattcacatctctc 760675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 13759049 - 13758981
Alignment:
Q  72 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtata 140  Q
    |||||||||||  |||| || ||||||||||||||||| || | |||||||||||||||  ||||||||    
T  13759049 ggctaagagaatccccacaaatgagattgacaccacattttgacccaaaaccttaagacattaggtata 13758981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 14715336 - 14715285
Alignment:
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||    
T  14715336 tcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctc 14715285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 20874668 - 20874610
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcat 148  Q
    ||||||||||||| |||||| ||||||||||||||||| ||  ||| ||||| ||||||    
T  20874668 aagtgagattgacgccacattttcatccaaaaccttaaaacattagatatatatgtcat 20874610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 42797046 - 42797151
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    ||||||||||||| | |||| ||| |||| | |||| ||| |||||||||||  || ||||||||||||||  | |  ||||| ||||| | ||||||||    
T  42797046 atcattgcatttgaccaagaaaaaccccacacgtgaaattcacaccacatctaaattcaaaaccttaagacattggaaatattagtcatctcacttatat 42797145  T
Q  160 gttgct 165  Q
    ||||||    
T  42797146 gttgct 42797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 227
Target Start/End: Complemental strand, 5279 - 5120
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctg 166  Q
    |||||| |||||||||| || | || ||| ||||||||||||| |||| ||||||   ||||||  |||||||||| |||| || |||||||||||| |     
T  5279 catttgactaagagaaa-ccaacaaatgatattgacaccacatattcacccaaaatagtaagacattaggtatattggtcacttcacttatatgttgttc 5181  T
Q  167 aatttatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||| |||| |||||||||||||||||| |||| ||||||  ||||||||||  ||||||||    
T  5180 aatgtatattcttgcatccaatgtagatgtttaactcacgcatgacacattctcatctctc 5120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 12125429 - 12125580
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    |||||||| |||| |||| |||| ||||||||||||  |||  |||| | |||||  |||||||||| ||||| | || ||||||||||| ||| ||||     
T  12125429 aagagaaaccccacaagtaagatagacaccacatctctatctcaaacatgaagacattaggtatattggtcatctcacatatatgttgctcaatatatac 12125528  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| || |||||||| | |||||| |||||||||||| ||||||||    
T  12125529 tcttgcatcaaaagtagaagtgtaactcactaatgacacattaacatctctc 12125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 9265443 - 9265297
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| || |||| |||||||||||| |||  ||||| ||||||||||||||  || ||||||| | ||| | ||||||||    
T  9265443 atcattacatttgtctaagagaaaccctataaatgagattgacactacagtttcattcaaaaccttaagacattaagtatattggacatctcacttatat 9265344  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcaca 206  Q
    |||||| ||| | || ||||||||| |||||| ||| || |||||||    
T  9265343 gttgcttaatatttactcttgcatcaaatgtaaaaggttaactcaca 9265297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 218
Target Start/End: Complemental strand, 9266882 - 9266725
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    ||||||| ||||| |||||||||| |||  || ||||||||||||||||| ||||| ||||||||||||||  |||||||||| | ||| | |||||||     
T  9266882 atcattgtatttgtctaagagaaa-cccgcaaatgagattgacaccacattttcattcaaaaccttaagacattaggtatattggacatcttacttatac 9266784  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| | || |||| |||| |||||| ||| || ||||||| ||| |||||||    
T  9266783 gttgctcaatatttactcttacatcaaatgtaaaaggttaactcacacatgtcacatta 9266725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 6436996 - 6436845
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||||||| | ||||||||||||| ||||||||||| | || ||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  6436996 aagagaaatccgacaagtgagattgacgccacatcttcacctaacaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 6436897  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    | |||| |||||||||||||||| ||| | | ||||||||||| ||| ||||    
T  6436896 ttttgcttccaatgtagaagtttaacttagacatgacacattaacatatctc 6436845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 9262921 - 9262779
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||||||| | | |||||||||| | |||||||||| | |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  9262921 aagagaaatccgacatgtgagattgagagcacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatat 9262822  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    | |||| |||||||||||||||| ||| ||| |||||||||||    
T  9262821 ttttgcttccaatgtagaagtttaacttacacatgacacatta 9262779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 50492 - 50419
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 163  Q
    |||||||||||||||||||||| ||||| ||||||||||||  |||||||||  ||||| | |||||| |||||    
T  50492 aagtgagattgacaccacatctccatcccaaaccttaagacattaggtatatgagtcatatcacttatttgttg 50419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 20934184 - 20934321
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    |||||||||||||||||||| ||||   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||||| |||||    
T  20934184 aagtgagattgacaccacatattcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatattattgcatacaatg 20934283  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| | ||||| |||| |||| | ||||||||    
T  20934284 tagaagtttaagtcacacatgaaacataaacatctctc 20934321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 14240497 - 14240556
Alignment:
Q  68 atttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaa 127  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||| ||||| |||||    
T  14240497 atttgtctaagagaaaccccacaaatgagattgacaccacatcttcattcaaaatcttaa 14240556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 216
Target Start/End: Original strand, 6087136 - 6087277
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| || ||||||| |||| |||| |||| | |||||||| |||   |||||||| |||| || | ||||||||||||||   | ||||    
T  6087136 taagagaaaccccacaattgagattaacactacattttcacctaaaaccttgagatattaggtatacttgtaatctcacttatatgttgctagttatata 6087235  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacat 216  Q
     | ||||||  ||||||||||||| ||| | | |||||||||    
T  6087236 ctattgcatgaaatgtagaagtttaacttaaacatgacacat 6087277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 432031 - 431975
Alignment:
Q  171 tatagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    |||| ||||||||||||||| ||| ||| |||||||| ||||||||||  |||||||    
T  432031 tatactcttgcatccaatgtcgaattttaactcacaattgacacattaatatctctc 431975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 32384 - 32542
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    ||||||||||||| | ||||||||  ||||| || | ||| ||| |||||||  |  ||||||||||||||| |  ||||||||||||| | ||||||||    
T  32384 atcattgcatttgaccaagagaaactccatacgtaaaattcacatcacatctaaactcaaaaccttaagactttgagtatatttgtcatctcacttatat 32483  T
Q  160 gttgctgaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    |||||| ||| |||| |||| |||  ||||||||||||| | |||||  ||||||||||    
T  32484 gttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacatta 32542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 11554328 - 11554470
Alignment:
Q  85 cccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatc 184  Q
    ||||||| ||||||||||||||||| || | |||||||||||||||  |||||| ||  ||||| | ||| |||||||| | ||    || || ||||||    
T  11554328 cccataaatgagattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatc 11554427  T
Q  185 caatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||    
T  11554428 caatgtagaaggttaactcacacatgacacattaacatctctc 11554470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 4852950 - 4852808
Alignment:
Q  85 cccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatc 184  Q
    ||||||| ||||||||||||||||| || |||||||| ||||||||  | |||| ||  ||||| | ||| |||||||| | ||    || || ||||||    
T  4852950 cccataaatgagattgacaccacattttgatccaaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatc 4852851  T
Q  185 caatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||||| || ||||||| ||||||||||| ||||||||    
T  4852850 caatgtagaaggttaactcacacatgacacattaacatctctc 4852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24360867 - 24360925
Alignment:
Q  1 aaaactaagacaacaatttatcataatgattggagctccgagggagcctgtaatgactt 59  Q
    |||| |||||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  24360867 aaaattaagacaacagtttatcataatgattggagctctaagggagcctgtaatgactt 24360925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 2970491 - 2970421
Alignment:
Q  93 tgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 163  Q
    |||||||||||||||||||| ||||||||  |||||||   |||||||| |||||||| ||||||||||||    
T  2970491 tgagattgacaccacatctttatccaaaattttaagacatgaggtatatgtgtcatttcacttatatgttg 2970421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 18089937 - 18090013
Alignment:
Q  92 gtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaa 168  Q
    ||||||||||||||||||||||| ||||||||||||| |  ||||||||||  |||| | | ||||||||| |||||    
T  18089937 gtgagattgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtttctgaa 18090013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 34515068 - 34515220
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaacct-taagactctaggtatatttgtcatttaacttatatgttgct 165  Q
    |||||| | |||||||| |||| || ||||||||||| ||||||||||  ||||||||  |||||  || ||||||| ||||| | || |  ||||| ||    
T  34515068 catttgaccaagagaaaccccaaaaatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggtcatctcacattcatgtttct 34515167  T
Q  166 gaatttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
     ||| |||| | |||| | |||||||||||||| ||| ||| |||||||||||    
T  34515168 caatatatacttttgctttcaatgtagaagtttaactgacacatgacacatta 34515220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 26595896 - 26595962
Alignment:
Q  96 gattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgtt 162  Q
    |||||||| |||||| |||||||||||||||||||  |||||  ||| ||||| | |||||||||||    
T  26595896 gattgacatcacatcatcatccaaaaccttaagacattaggtgcattggtcatcttacttatatgtt 26595962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 24398047 - 24397916
Alignment:
Q  95 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 194  Q
    ||||||||| ||| |||||| |||||| |||| |||  ||| |||||| ||||| | | |||||||||||| ||| |||| |  | | || |||||||||    
T  24398047 agattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatactaattcgtctaatgtagaa 24397948  T
Q  195 gttttactcacaaatgacacattaccatctctc 227  Q
    | || ||||||| |||||||||||  |||||||    
T  24397947 g-ttaactcacacatgacacattaatatctctc 24397916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 29214195 - 29214299
Alignment:
Q  59 tatcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttata 158  Q
    ||||||| ||||  |||||||| || | |||||||||||||   | ||||||||||||||||  ||||||||  |||||||||  ||||| | |||| ||    
T  29214195 tatcattacattacgctaagagcaaccacataagtgagattattatcacatcttcatccaaagtcttaagacaataggtatatgagtcatctcacttgta 29214294  T
Q  159 tgttg 163  Q
    |||||    
T  29214295 tgttg 29214299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 17474599 - 17474751
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||||| ||| | ||  |||||||| | ||| ||||    
T  17474599 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatata 17474698  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17474699 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17474751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 17578615 - 17578463
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||||| ||| | ||  |||||||| | ||| ||||    
T  17578615 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatatttgccatctcacaaatatgttgttcaatatata 17578516  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17578515 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17578463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 6202483 - 6202346
Alignment:
Q  68 atttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctga 167  Q
    ||||| |||||||||| || |||| ||||||||||||  ||| ||||| ||||| ||||||||  || ||||||| | ||| | |||||||||||||| |    
T  6202483 atttgtctaagagaaaccctataaatgagattgacactgcattttcattcaaaatcttaagacattaagtatattggacatctcacttatatgttgctta 6202384  T
Q  168 atttatagtcttgcatccaatgtagaagttttactcac 205  Q
    || | || ||||||||| |||||| ||| || ||||||    
T  6202383 atatttactcttgcatcaaatgtaaaaggttaactcac 6202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Original strand, 17510083 - 17510235
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||| | ||| | ||  |||||||| | ||| ||||    
T  17510083 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 17510182  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17510183 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17510235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 17543131 - 17542979
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttata 174  Q
    ||||||||| |||| |||| |||| |||||||||||| ||||| |||||| ||||   |||||||||| | ||| | ||  |||||||| | ||| ||||    
T  17543131 taagagaaaccccacaagtaagatggacaccacatctccatccgaaacctgaagatattaggtatattggccatctcacaaatatgttgttcaatatata 17543032  T
Q  175 gtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
     ||||||||| || |||||||||| ||||||| | ||| |||||  |||||||    
T  17543031 ctcttgcatcaaaagtagaagtttaactcacacacgacgcattaatatctctc 17542979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 38788064 - 38788213
Alignment:
Q  69 tttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaa 168  Q
    |||| ||||||||||  ||| || ||||||||||||||||||||||| |||||  |||||||   ||||||||| | ||| | | |||||||||||| ||    
T  38788064 tttgtctaagagaaactccacaaatgagattgacaccacatcttcattcaaaattttaagacatcaggtatattggacatctcagttatatgttgctcaa 38788163  T
Q  169 tttatagtcttgcatccaatgtagaagttttactcacaaatgacacatta 218  Q
    | | || | |||| || |||||| ||| || ||||||| ||| |||||||    
T  38788164 tatttacttttgcgtcaaatgtaaaaggttaactcacacatgtcacatta 38788213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 48553243 - 48553312
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaaga 129  Q
    ||||| |||||||| || ||||||||||| ||||||||||  || || ||||||||| ||||||||||||    
T  48553243 atcatcgcatttggttacgagaaatcccacaagtgagattatcaacatatcttcatcaaaaaccttaaga 48553312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 219
Target Start/End: Complemental strand, 24708597 - 24708450
Alignment:
Q  72 ggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaattt 171  Q
    |||||||||||| | || ||||||| || | | |||||||||||| |||  |||||     |||||||||| || |||| |||||||||||||| ||  |    
T  24708597 ggctaagagaaaccacacaagtgagtttcaaatcacatcttcatcaaaagtcttaaagtattaggtatattggttattttacttatatgttgctcaacat 24708498  T
Q  172 atagtcttgcatccaatgtagaagttttactcacaaatgacacattac 219  Q
    ||| |||| ||| ||||||| || ||| ||||| || |||||||||||    
T  24708497 atactcttacatacaatgtataattttaactcataattgacacattac 24708450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 27938875 - 27938832
Alignment:
Q  98 ttgacaccacatcttcatccaaaaccttaagactctaggtatat 141  Q
    |||||||||||||| |||||||||||||||| || |||||||||    
T  27938875 ttgacaccacatctacatccaaaaccttaaggctttaggtatat 27938832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 42078967 - 42079043
Alignment:
Q  152 acttatatgttgctgaatttatagtcttgcatccaatgta--gaagttttactcacaaatgacacattaccatctct 226  Q
    ||||| |||||||| ||| | || ||||||||| ||||||  ||||||| ||||||| ||||||||||| |||||||    
T  42078967 acttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaacatctct 42079043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 45583 - 45678
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatt 170  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||||    
T  45583 taagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 45678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 153204 - 153109
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatt 170  Q
    ||||||||| |||| |||||||||  |||||| ||||||| |||||| ||||||||  |||||||||||||||| | | |||||||||||| ||||    
T  153204 taagagaaaccccacaagtgagataaacaccaaatcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgcttaatt 153109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 227
Target Start/End: Original strand, 31089469 - 31089623
Alignment:
Q  74 ctaagagaaatcccataagtgagattgacaccacatcttcatccaaaac-cttaagactctaggtatatttgtcatttaacttatatgttgctgaattta 172  Q
    |||||||||| | || ||||||||||||||||||||| ||| | ||||  ||| ||||  ||||||||||  |||| |  ||||||||||||| ||  ||    
T  31089469 ctaagagaaacctcacaagtgagattgacaccacatcctcaccaaaaaaacttcagacattaggtatattgatcatctcgcttatatgttgctcaaaata 31089568  T
Q  173 tagtcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    || |||| |||||||||||||| ||| ||| ||| ||||||||||| ||| ||||    
T  31089569 tactctttcatccaatgtagaaatttaacttacatatgacacattaacatatctc 31089623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 227
Target Start/End: Complemental strand, 16853042 - 16852891
Alignment:
Q  76 aagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatag 175  Q
    ||||||||||| | | ||||||||||||||||||||||    |||||||||| ||  || ||||||| ||||| | || |  ||||| || ||| ||||     
T  16853042 aagagaaatccgacatgtgagattgacaccacatcttcccttaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatac 16852943  T
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    | |||| |||||||||||||||| ||| ||| ||||||||||| ||| ||||    
T  16852942 ttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctc 16852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 11976959 - 11976911
Alignment:
Q  100 gacaccacatcttcatccaaaaccttaagactctaggtatatttgtcat 148  Q
    |||| |||||||||||||||||||||||||| ||| |||||| ||||||    
T  11976959 gacaacacatcttcatccaaaaccttaagacactatgtatatgtgtcat 11976911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 43387042 - 43387179
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    |||| ||||||||| |||| ||||| |||||| ||||||||  ||| ||||   ||||||| ||||||||||| || ||  | || | |||||| |||||    
T  43387042 aagtaagattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatg 43387141  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    |  || ||| |||||||  |||||||||| ||||||||    
T  43387142 tgtaattttaactcacacttgacacattaacatctctc 43387179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 12352 - 12247
Alignment:
Q  60 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatat 159  Q
    |||||| |||||| |||||||||| ||||  | |||||||| |||||||||||||| ||||| ||||||||   ||||||||| | ||| | ||||||||    
T  12352 atcattacatttgtctaagagaaaccccacgaatgagattgccaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatat 12253  T
Q  160 gttgct 165  Q
    ||||||    
T  12252 gttgct 12247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 10561 - 10657
Alignment:
Q  69 tttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgct 165  Q
    |||| |||||||||| || | ||||||||||||||| |||||||||||||||| |||| |||  | ||||| || ||||| | ||||||||||||||    
T  10561 tttgtctaagagaaaccctacaagtgagattgacactacatcttcatccaaaaacttaggacatttggtatgttcgtcatctcacttatatgttgct 10657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 128 - 2
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    ||||||||||||||||||||||| |   |||| |||||| |  ||||||||||  || | |  ||||||||||||| ||| |||| | |||||| |||||    
T  128 aagtgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatg 29  T
Q  190 tagaagttttactcacaaatgacacat 216  Q
    ||||||||| ||||||| |||| ||||    
T  28 tagaagtttaactcacacatgaaacat 2  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 46261 - 46321
Alignment:
Q  67 catttggctaagagaaatcccataagtgagattgacaccacatcttcatccaaaaccttaa 127  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||| ||||||||||    
T  46261 catttgactaagagaaatgccataagtgatattgacaccacctcatcatctaaaaccttaa 46321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 7539 - 7637
Alignment:
Q  93 tgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgta 191  Q
    |||||||||||||||| |||||    ||||||||||||  ||||||| || ||||| |||||||||||||||| ||  | || |||| |||||||||||    
T  7539 tgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgta 7637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 9048753 - 9048715
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaag 128  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9048753 aagtgagattgacaccacatcttcatccaaaatcttaag 9048715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 38012839 - 38012936
Alignment:
Q  101 acaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaagttt 198  Q
    |||||||||||  || ||||||| ||| ||  | |||||||| ||||||| | |||||||||||| ||| | || |||| ||| ||||||||||||||    
T  38012839 acaccacatctaaattcaaaaccataaaacattgggtatattagtcatttcagttatatgttgctcaatatctactcttacatacaatgtagaagttt 38012936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 38015875 - 38016012
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatg 189  Q
    |||||||||||||| |||| ||||| |||||| |||||| |  ||| |||||  ||||| | |||||||||||||| ||  | || | |||||| |||||    
T  38015875 aagtgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatg 38015974  T
Q  190 tagaagttttactcacaaatgacacattaccatctctc 227  Q
    |   | ||| |||||||  |||||||||| ||||||||    
T  38015975 tgttattttaactcacacttgacacattaacatctctc 38016012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 185 - 258
Alignment:
Q  90 aagtgagattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttg 163  Q
    |||||||||||||||||||||| ||||| ||||||||||||  ||| |||||  ||||| | |||||| |||||    
T  185 aagtgagattgacaccacatctccatcctaaaccttaagacattagatatatgagtcatatcacttatttgttg 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 30970 - 30839
Alignment:
Q  95 agattgacaccacatcttcatccaaaaccttaagactctaggtatatttgtcatttaacttatatgttgctgaatttatagtcttgcatccaatgtagaa 194  Q
    ||||||||| ||| |||||| |||||| |||| |||  ||| |||||| ||||| | | |||||||||||| ||| |||| | | ||| | |||||||||    
T  30970 agattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgtagaa 30871  T
Q  195 gttttactcacaaatgacacattaccatctctc 227  Q
    | || ||||||| |||||||||||  |||||||    
T  30870 g-ttaactcacacatgacacattaatatctctc 30839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 95951 - 96002
Alignment:
Q  176 tcttgcatccaatgtagaagttttactcacaaatgacacattaccatctctc 227  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||| ||||||||    
T  95951 tcttgcatcaaatgtagaagtttaactcacacatgaaacattaacatctctc 96002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1804 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 1072 - 1034
Alignment:
Q  104 ccacatcttcatccaaaaccttaagactctaggtatatt 142  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  1072 ccacatcttcatccaaaaccttaagacaataggtatatt 1034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 16017 - 16054
Alignment:
Q  75 taagagaaatcccataagtgagattgacaccacatctt 112  Q
    ||||||||||| || |||||||||||||||||||||||    
T  16017 taagagaaatcacacaagtgagattgacaccacatctt 16054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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