View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_high_7 (Length: 468)
Name: NF10273_high_7
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 48593282 - 48593740
Alignment:
| Q |
1 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593282 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcac |
48593381 |
T |
|
| Q |
101 |
cagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593382 |
cagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaat |
48593481 |
T |
|
| Q |
201 |
gctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593482 |
gctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaa |
48593581 |
T |
|
| Q |
301 |
tgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
48593582 |
tgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtt |
48593677 |
T |
|
| Q |
401 |
tatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctctc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48593678 |
tatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctctc |
48593740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 48597893 - 48598351
Alignment:
| Q |
1 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597893 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcac |
48597992 |
T |
|
| Q |
101 |
cagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597993 |
cagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaat |
48598092 |
T |
|
| Q |
201 |
gctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48598093 |
gctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaa |
48598192 |
T |
|
| Q |
301 |
tgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
48598193 |
tgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtt |
48598288 |
T |
|
| Q |
401 |
tatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctctc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
48598289 |
tatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctctc |
48598351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 23230976 - 23230593
Alignment:
| Q |
1 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaaga---------tattgacatg |
91 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| || ||| |
|
|
| T |
23230976 |
catttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaacaaagaaggaaacaatatagatatg |
23230877 |
T |
|
| Q |
92 |
aaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctt |
191 |
Q |
| |
|
|||||||| || | ||||||| | ||||||||||||||||||||||| || ||||||||||| |||||| | || ||||| ||||| ||| | || |||| |
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|
| T |
23230876 |
aaagggcatcactatgagttgctaccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgccaattgcccaccgtagtcggggctt |
23230777 |
T |
|
| Q |
192 |
tggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcc |
291 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || ||| |||| || ||||||| |||| | |||||||||||| | ||||||||||| ||||| |
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|
| T |
23230776 |
tggtgcaatgctttgagtggaaaatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggatgaaagacctggattgaccgctcc |
23230677 |
T |
|
| Q |
292 |
tagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtga |
375 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| ||||||||||||||||| |
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|
| T |
23230676 |
tagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaatttgtga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 23223231 - 23222890
Alignment:
| Q |
1 |
catttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaa-------aacaaag--atattgacatg |
91 |
Q |
| |
|
|||||||||||| | ||||||| |||||| ||| |||||||| |||||||||| || ||||||||||||||| || | || | || || || |
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|
| T |
23223231 |
catttgggctattggaagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggtttttagaatctggaaaagagagtgagatagatatc |
23223132 |
T |
|
| Q |
92 |
aaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctt |
191 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||||| | || |||| || ||||| ||||| |||| |
|
|
| T |
23223131 |
aaagggcatgactttgagttgttgccatttggttctggaaggagaggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctt |
23223032 |
T |
|
| Q |
192 |
tggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcc |
291 |
Q |
| |
|
| ||||||||||||||||||||||||||||| || ||| |||| | |||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
23223031 |
tagtacaatgctttgagtggaagatgcttgactctgaaggtaaattattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcc |
23222932 |
T |
|
| Q |
292 |
tagggccaatgatcttatttgtattccagttgcaagattgaa |
333 |
Q |
| |
|
||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
23222931 |
tagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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