View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_10 (Length: 456)
Name: NF10273_low_10
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 43654004 - 43653571
Alignment:
| Q |
1 |
atcgatcagcagaactaaactagcaatccattacacatggctgcaatgaactcaagtgtattagcttgtagctatgccatatctggttctgagctcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43654004 |
atcgatcagcagaactaaactagcaatccattacacatggctgcaatgaactcaagtgtattagcttgtagctatgccatatctggttctgagctcaatg |
43653905 |
T |
|
| Q |
101 |
caaagctcatttcagtgccctctgctgcatcaccaggggtttcaggtatcaagctaccattgatcaaggctcagcaggtgagaattcctgaagccaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653904 |
caaagctcatttcagtgccctctgctgcatcaccaggggtttcaggtatcaagctaccattgatcaaggctcagcaggtgagaattcctgaagccaaaga |
43653805 |
T |
|
| Q |
201 |
atcaagagcaagtgatggaagaagaaatgctcttgctttattggcagctacacttttcaccactgctgtttcagcctcaaattcttctgctaatgctggc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43653804 |
atcaagagcaagtgatggaagaagaaatgctcttgctttattggcagctacacttttcaccactgctgtttcagcctccaattcttctgctaatgctggc |
43653705 |
T |
|
| Q |
301 |
gttattgaagaataccttgaaaaaagcaaggccaataaggtac-nnnnnnnnaatctttcttcccttgtaagaagctaannnnnnnaccaattttatcct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
43653704 |
gttattgaagaataccttgaaaaaagcaaggccaataaggtactttttttttaatctttcttcccttgtgagaagctaatttttttaccaattttatcct |
43653605 |
T |
|
| Q |
400 |
atgttaagaaaatcttctatttttaagcttaggt |
433 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43653604 |
ttgttaagaaaatcttctatttttaagcttaggt |
43653571 |
T |
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