View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_11 (Length: 447)
Name: NF10273_low_11
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 46472767 - 46472420
Alignment:
| Q |
1 |
tgtcaaattaattatgaaatatctcgaggtaaattacaatttgagaagatcaattataagattgttgaatt-agaacagatattaaggggtcttgttagg |
99 |
Q |
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| T |
46472767 |
tgtcaaattaattatgaaatatctcgaggtaaattacaatttgagaagatcaattataagattgttgaatttagaacagatattaaggggtcttgttagg |
46472668 |
T |
|
| Q |
100 |
attagagacaaggtgaaagatacggagatttgtgaagtgaaaaatagcaaagtttaagacaaaggttgcatagtatttggttccatactgcaaggtgaat |
199 |
Q |
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| T |
46472667 |
attagagacaaggtgaaagctatggagatttgtgaagtgaaaaatagcaaagtttaagacaaaggttgcatagtatttggttccatactgcaaggtgaat |
46472568 |
T |
|
| Q |
200 |
gtctttatggatttgaaaatgtctgagacttcttacatagtaatatttaaacagtccaaggccaaagttgccgagttcatcaaactgatatcaagtaata |
299 |
Q |
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| T |
46472567 |
gtctttaggaatttgaaaatgtctgaga---cttacaaagtaatatttaaacagtccaaggccaaagttgttgagttcatcaaactgatatcaagtaata |
46472471 |
T |
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| Q |
300 |
tttgaatcctagttcccacatggtcaataaatcgaaatcgtactcgtgtaa |
350 |
Q |
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| T |
46472470 |
tttgaatcctagttcccacatggtcaataaatcgaaatcgtactcgtgtaa |
46472420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 46472381 - 46472347
Alignment:
| Q |
396 |
tatattcctatggttcataaaataatgacaattat |
430 |
Q |
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| T |
46472381 |
tatattcctatggttcagaaaataatgacaattat |
46472347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 430
Target Start/End: Complemental strand, 46472413 - 46472379
Alignment:
| Q |
396 |
tatattcctatggttcataaaataatgacaattat |
430 |
Q |
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| T |
46472413 |
tatattcctatggttcttaaaataatgacaattat |
46472379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 35773491 - 35773603
Alignment:
| Q |
4 |
caaattaattatgaaatatctcgaggtaaattacaatttgagaagatcaattataagattgttgaattagaacagatattaaggggtcttgttaggatta |
103 |
Q |
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||||||| || ||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |||||||| | ||||| ||||||||| | ||| |
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| T |
35773491 |
caaattatttctgaaatatctcgaggtaaaatacaatttgaaaagatcaattctgagattgttgagttagaacaaaagttaagtggtcttgttgagctta |
35773590 |
T |
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| Q |
104 |
gagacaaggtgaa |
116 |
Q |
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| T |
35773591 |
gagccaaggtgaa |
35773603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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