View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_16 (Length: 423)
Name: NF10273_low_16
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 2623465 - 2623749
Alignment:
| Q |
15 |
gttataagttagaagtctcacattgaataaaagaatggatgttgagcgatatatatgtgagagaactctatattgttgagtattgctcatatatacgcaa |
114 |
Q |
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| T |
2623465 |
gttataagttataagtctcacattgaataaaagaatggatgttgagcgatatatctgtgagagaactctatattgttgagtattgctcatatatacgcaa |
2623564 |
T |
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| Q |
115 |
aaaaggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctccatttattgtaaactggactgtaatattgtatatattagttaa |
214 |
Q |
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| T |
2623565 |
aaaaggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctccatttatcgtaaactggactgtaatattgtatatattagttaa |
2623664 |
T |
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| Q |
215 |
ttcatcacagaaataaacataactttaggtgctttatagtcccaaaggtatgcactatttgtcgaactgcgagaacaaagattgt |
299 |
Q |
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| T |
2623665 |
ttcatcacagaaataaacataactttaactgctttatagtcccaaaggtatgcactattttccgaactacgagaacaaagattgt |
2623749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 295 - 415
Target Start/End: Complemental strand, 2629591 - 2629471
Alignment:
| Q |
295 |
attgtttcttttgcgttttgtttttacgtattactggtatcgtttgaataagccaatcttttcattttaaaaagggtccaaatgggccaactcagaatgt |
394 |
Q |
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| T |
2629591 |
attgtttcttttgcgttttgtttttacgtattactggtatcgtttgaataagccaatcttttcattttaaaaagggtccaaatgggccaactcagaatgt |
2629492 |
T |
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| Q |
395 |
gtacttactgtataagcctat |
415 |
Q |
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| T |
2629491 |
gtacttactgtataagcctat |
2629471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 37841563 - 37841516
Alignment:
| Q |
87 |
ttgttgagtattgctcatatatacgcaaaaaaggggcaaggggtggag |
134 |
Q |
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| T |
37841563 |
ttgttgagtatggctcatatatacacaaaagaggggcaaggggtggag |
37841516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 39129253 - 39129308
Alignment:
| Q |
118 |
aggggcaaggggtggagaaggagttgaactagggtagtgttgcgaagctccctcca |
173 |
Q |
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| T |
39129253 |
aggggcaaagggtggtgaaggagctgagctagcgtactgttgcgaagctccctcca |
39129308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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