View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_18 (Length: 415)
Name: NF10273_low_18
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 46 - 370
Target Start/End: Original strand, 19169063 - 19169393
Alignment:
| Q |
46 |
aaaagaagattagttggattgtatctatggtgaatcttaattgcctcttcttctatggaatcgttgtttccatgtttttacatttaaagaaaggataaaa |
145 |
Q |
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| T |
19169063 |
aaaagaagattagttggattgtatctatggtgaatcttaattgcctcttcttctatggaatcgttgtttccatgtttttacatttaaagaaaggataaaa |
19169162 |
T |
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| Q |
146 |
ctggattgcgggaaaatcagaggaagaatgatgaataaagcacatctgaaccgtc----ttgatctaagggttgtaatttcacccacgcatctgaactgt |
241 |
Q |
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| T |
19169163 |
ctggattgcgggaaaatcagaggaagaatgatgaataaagcacatctgaaccgtcaatattgatctaagggttgtaatttcacccacgcatctgaactgt |
19169262 |
T |
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| Q |
242 |
ccatattgatctaagcacagataacgacgatgattttcatattttgagatatgacgtgtaatttggtgaataatactta---cactatccttcatttttc |
338 |
Q |
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| T |
19169263 |
ccatattgatctaagcacagataa-gacgatgattttcatattttgagatatgacgtgtaatttggtgaataatacttagactactaaacttcacttttc |
19169361 |
T |
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| Q |
339 |
gtcttgtaaatttcaaaatgttgcaattttgg |
370 |
Q |
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| T |
19169362 |
gtcttctaagttttaaaatgttacaattttgg |
19169393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 19169016 - 19169047
Alignment:
| Q |
16 |
gattggagaagcaacttccatggaaaatgaaa |
47 |
Q |
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| T |
19169016 |
gattggagaagcaacttccatggaaaatgaaa |
19169047 |
T |
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