View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_21 (Length: 407)
Name: NF10273_low_21
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 45970203 - 45969821
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970203 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
45970104 |
T |
|
| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccattaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45970103 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcttctggaatccaatccattaa |
45970004 |
T |
|
| Q |
216 |
-cacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45970003 |
ccacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctgtatatttcattcacttttctcata |
45969904 |
T |
|
| Q |
315 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaatttctccgactaggctcttagattcatc |
397 |
Q |
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| T |
45969903 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaatttctccgactaggctcttagattcatc |
45969821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 37652679 - 37653034
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
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||||||||||||||||| || || ||||| ||||||||||||| |||||| |||||||||| || || |||||||||||| || | | |||||||| || |
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| T |
37652679 |
catatcttaagaggcatatgccccacaagttcgtcccattttgcttctatcagattcaaaatagcctcgttctgtcttggagtgctcagagatgaaataa |
37652778 |
T |
|
| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccatta- |
214 |
Q |
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| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| || | ||| ||||||| || |||||||||||||||| |
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| T |
37652779 |
tggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcaggaatccaatccattac |
37652878 |
T |
|
| Q |
215 |
acacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcata |
314 |
Q |
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|| | ||||||||||| |||||||||||||| ||||| | ||||| | |||||||||||||| || || |||||||||||||| | ||| ||||| |
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| T |
37652879 |
ccagaaaggaatttgttcaggatagatgttgaatttgttgatggcatccatggagtactcttctgtgttgtatctatatatttcattaatctttttcata |
37652978 |
T |
|
| Q |
315 |
tccaaccaataatactctctaatatggaaggacaatgcacttagtctgttgttaat |
370 |
Q |
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|||| ||||||||| | |||||| ||||| || | |||||| |||||||||||||| |
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| T |
37652979 |
tccacccaataatattgtctaatgtggaacgatagtgcactcagtctgttgttaat |
37653034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 4319235 - 4319057
Alignment:
| Q |
16 |
catatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaa |
115 |
Q |
| |
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||||| || |||||||||||||||| | ||| |||||||| | ||||||| |||||||| || || ||||||| ||| |||||||| || |||| |
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| T |
4319235 |
catattttgagaggcatttgaccaatgatatcatcccatttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaagaagagacaa |
4319136 |
T |
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| Q |
116 |
tagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttc |
194 |
Q |
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| | |||||| ||||| || ||||||||||||| ||||| ||||| ||||| | ||| ||||| || || |||||||| |
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| T |
4319135 |
tggcccaaaggtttccgagtgtgaaaaacctgaagtccatatgagcaggttgcagattgcctatgaagtatccaccttc |
4319057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 170
Target Start/End: Original strand, 38510610 - 38510641
Alignment:
| Q |
139 |
aaaaacctgaaatccatgtgagctggttgtaa |
170 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38510610 |
aaaaacctgaaatccatgtgagctggttgtaa |
38510641 |
T |
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