View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_22 (Length: 406)
Name: NF10273_low_22
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_22 |
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| [»] scaffold0538 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 15554532 - 15554918
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttctattaaatttcaataatttcgttctcctat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15554532 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttctattaaatttcaataatttcgttctcctat |
15554631 |
T |
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| Q |
116 |
tctttgaataacatagaattcttagattttatttcatgtacaaaattatcgttgaataggtgaaatgaggaggattatttcaaaat----------nnnn |
205 |
Q |
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| T |
15554632 |
tctttgaataacatagaattcttagattttatttcatgtacaaaattatcgttgaataggtgaaatgaggaggattatttcaaaattaaaaaaaaaaaaa |
15554731 |
T |
|
| Q |
206 |
nnnggtgaaatgaggaggatgggtataggcatggcggacactgtaaatcataatttgaggagagtcatgtggtaacattcaaaaatatatctaaaatatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15554732 |
aaaggtgaaatgaggaggatgggtataggcatggcggacactgtaaatcataatttgaggagagtcacgtggtaacattcaaaaatatatctaaaatatt |
15554831 |
T |
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| Q |
306 |
tcttcatacaaaaactggaattagtataaatgagagtgattaatccatctatctattgttagagttaaatctatgtttcttaagatc |
392 |
Q |
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| T |
15554832 |
tcttcataaaaaaactggaattagtataaatgagagtgattaatccatctatctattgttagagttaaatctatgtttcttaagatc |
15554918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0538 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0538
Description:
Target: scaffold0538; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 3303 - 3234
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttc |
85 |
Q |
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| T |
3303 |
ttattttatgttattgtattctcacggagaatttagattccatataaatctagtgactttccacaatttc |
3234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0538; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 7655 - 7586
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttc |
85 |
Q |
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| T |
7655 |
ttattttatgttattgtattctcacggagaatttagattacatataaatctagtgactttccacaatttc |
7586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13387423 - 13387492
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttc |
85 |
Q |
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| T |
13387423 |
ttattttatgttattgtattcacacggagaatatagattccatataaatctagtgactttccacaatttc |
13387492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13371792 - 13371861
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttc |
85 |
Q |
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| T |
13371792 |
ttattttatgttattgtattctcaaggaaaatttagattccatataaatctagtgactttccacaatttc |
13371861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13381993 - 13382062
Alignment:
| Q |
16 |
ttattttgtgttattgtattcccacatagaattttgattcaatacaaatctagtgactttccacaatttc |
85 |
Q |
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| T |
13381993 |
ttattttatgttattgtattctcaaggaaaatttagattccatataaatctagtgactttccacaatttc |
13382062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 15115630 - 15115588
Alignment:
| Q |
346 |
taatccatctatctattgttagagttaaatctatgtttcttaa |
388 |
Q |
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| T |
15115630 |
taatccatcaatctattgttagattcaaatctatgtttcttaa |
15115588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 19971041 - 19970938
Alignment:
| Q |
33 |
attcccacatagaattttgattcaatacaaatctagtgactttccacaatttctattaaatttcaataatttcgttctcctattctttgaataacataga |
132 |
Q |
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||||||||| ||||||| || || ||| |||||||| ||||||| ||| | | | ||| ||| ||||||||| | ||||| ||||||||||||||||| |
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| T |
19971041 |
attcccacaaagaatttggactccataaaaatctagcgactttcgacattattt-ttagattccaataattttatcctccttatctttgaataacataga |
19970943 |
T |
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| Q |
133 |
attct |
137 |
Q |
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||||| |
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| T |
19970942 |
attct |
19970938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 21021768 - 21021871
Alignment:
| Q |
33 |
attcccacatagaattttgattcaatacaaatctagtgactttccacaatttctattaaatttcaataatttcgttctcctattctttgaataacataga |
132 |
Q |
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||||||||| ||||||| || || ||| |||||||| ||||||| ||| | | | ||| ||| ||||||||| | ||||| ||||||||||||||||| |
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| T |
21021768 |
attcccacaaagaatttggactccataaaaatctagcgactttcgacattattt-ttagattccaataattttatcctccttatctttgaataacataga |
21021866 |
T |
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| Q |
133 |
attct |
137 |
Q |
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||||| |
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| T |
21021867 |
attct |
21021871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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