View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_28 (Length: 370)
Name: NF10273_low_28
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 6264416 - 6264757
Alignment:
| Q |
18 |
gttaatagccattgcagcttttgatatttggtttgcgcaatcacgcttatgctgcaactgctttcttgaattttcatggagaccgcaaggagggacttga |
117 |
Q |
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| T |
6264416 |
gttaatagccattgcagctttcgatatttggtttgcgcaatcgcgcttatgctgcaactgctttcttgaattttcatggagaccgcaaggagggacttga |
6264515 |
T |
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| Q |
118 |
ggtacaggaagccaccatttctcttcttgtctctgaaaagaagatgaaccgtcttcattgcgagccataacaccttggtctacatacctgaactctgtat |
217 |
Q |
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| T |
6264516 |
ggtacaggaagccaccatttctcttcttgtctctgaaaagaagatgaaccgtcttcattgcgagccataacaccttggtctacatacctgaactctgtat |
6264615 |
T |
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| Q |
218 |
tgacaaaactgtctagtatttcctgtataaagagaaaatgtttagaaagtttggatacaaaactgaaataatgtgagtaaaatgtagaaaaatcttacaa |
317 |
Q |
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| T |
6264616 |
tgacaaaactgtctagtatttcctgtataaagagaaaatgtttagaaaatttggatacaaaactgaattaatgtgaataaaaggaagaaacatcttacaa |
6264715 |
T |
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| Q |
318 |
gaagcatgttatctaattttcgcaaagctggcagattgatgt |
359 |
Q |
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| T |
6264716 |
gaagcatgttatctaattttcgcaaagctggcagattgatgt |
6264757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 23782225 - 23782354
Alignment:
| Q |
25 |
gccattgcagcttttgatatttggtttgcgcaatcacgcttatgctgcaactgctttcttgaattttcatggagaccgcaaggagggacttgaggtacag |
124 |
Q |
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| T |
23782225 |
gccattgcggcttttaagatttggctcgtgcaatcacgcttgtgctgcaattgctttcttgacttttcgtggagaccacaaggagggactcggggaaccg |
23782324 |
T |
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| Q |
125 |
gaagccaccatttctcttcttgtctctgaa |
154 |
Q |
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| T |
23782325 |
gaagccaccatttctcttcttgtcgctgaa |
23782354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 23782536 - 23782585
Alignment:
| Q |
307 |
aaatcttacaagaagcatgttatctaattttcgcaaagctggcagattga |
356 |
Q |
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| T |
23782536 |
aaatcttacaagaagcatgttatctaacttgcgcagagctggaagattga |
23782585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 23782394 - 23782456
Alignment:
| Q |
179 |
gagccataacaccttggtctacatacctgaactctgtattgacaaaactgtctagtatttcct |
241 |
Q |
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| T |
23782394 |
gagctataacaccttgatctacataccagaactcggtatcgacaaaactatcttgaatttcct |
23782456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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