View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_30 (Length: 356)
Name: NF10273_low_30
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1455150 - 1455493
Alignment:
| Q |
1 |
tgtggcttcagttccacgctacagacaggatttggacaacaaattttctttatattttggcttagttgttcagccacatgcttagatatacaattggcac |
100 |
Q |
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| T |
1455150 |
tgtggcttcagttccacgctacagacaggatttggacaacaaattttctttatattttggcttagttgttcagccacatgcttagatatacaattggcac |
1455249 |
T |
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| Q |
101 |
aaaactgatgattgcatatggtacttcctctgacaatattggcatctggtacgatatcatagcataaatcacaaatggattttgattttggagactgtga |
200 |
Q |
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| T |
1455250 |
aaaactgatgattgcatatggtacttcctctgacaatattggcatctggtacgatatcatagcataaatcacaaatggattttgattttggagactgtga |
1455349 |
T |
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| Q |
201 |
tgaacatttacaaccggactcaacggttgctttctcctttgatttttgttgttgaaattcattgcaattcactttcactaagttttgataagatgcttgg |
300 |
Q |
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| T |
1455350 |
tgaacatttacgaccggactcaacggttgctttctccttcgatttttgttgttgaaattcattgcaattcactttcactaagttttgataagatgcttgg |
1455449 |
T |
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| Q |
301 |
ttagaatcaactgggatcgcgtctttcttcttagccttcttctt |
344 |
Q |
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| T |
1455450 |
ttagaatcaactgcgatcgcgtctttcttcttcgccttcttctt |
1455493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 1451431 - 1451560
Alignment:
| Q |
1 |
tgtggcttcagttccacgctacagacaggatttggacaacaaattttctttatattttggcttagttgttcagccacatgcttagatatacaattggcac |
100 |
Q |
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| T |
1451431 |
tgtggctttagctccacgcaacagcctggatttggacaataaacattctttatgttgtggattacttggtcagccacatgcttagatatacaattgtcac |
1451530 |
T |
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| Q |
101 |
aaaactgatgattgcatatggtacttcctc |
130 |
Q |
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| T |
1451531 |
aaaaggggtgattgcatattgcacttcctc |
1451560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 736367 - 736321
Alignment:
| Q |
58 |
tggcttagttgttcagccacatgcttagatatacaattggcacaaaa |
104 |
Q |
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| T |
736367 |
tggcttagttgtgcagccacatgattagatatacaattagcacaaaa |
736321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 1451709 - 1451754
Alignment:
| Q |
244 |
ttttgttgttgaaattcattgcaattcactttcactaagttttgat |
289 |
Q |
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| T |
1451709 |
ttttgttgttggaattcattacacttcactttcactgagttttgat |
1451754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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