View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10273_low_32 (Length: 352)
Name: NF10273_low_32
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 32072556 - 32072883
Alignment:
| Q |
19 |
aacaagtgtatttagagcactagtttaaaaattgaaaaattatgaatgcacattttccaaattaactttatacatttagnnnnnnn-atcttattctttc |
117 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32072556 |
aacaactgtatttagagcactaatttaaaaattgaaaaattatgaatgcacagtttccaaattaactttatacatttagttttttttatcttattctttc |
32072655 |
T |
|
| Q |
118 |
taaacttgattgaattagtaagctgggaatttttgtttgttcgtagttggaaatcaa-gaatggatttgattcaaataatattttatgatttgaccttta |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32072656 |
taaacttgattcaattagtaagctgggaatttttgtctgttcgtagttggaaatcaacgaatggatttgattcaaataatattttatgatttgaccttta |
32072755 |
T |
|
| Q |
217 |
ttaaatgagattactagggaaaaatatgaatagaatatgatataagatatttgtgcatttgaagacattctagagatttaaagtgagtttctcattgttt |
316 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32072756 |
ttaaatgagattagtagggaaaactatgaatagaatatgatataaaatatttgtgcatttgaagacattctagagatttaaagtgagtttctcattgttt |
32072855 |
T |
|
| Q |
317 |
ggaaaatggtttgtaatgttttcatctca |
345 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |
|
|
| T |
32072856 |
gg-aaatggtttgtaatgttttgatctca |
32072883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University