View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_low_33 (Length: 347)

Name: NF10273_low_33
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_low_33
NF10273_low_33
[»] chr6 (15 HSPs)
chr6 (20-336)||(31284637-31284953)
chr6 (43-335)||(26729345-26729640)
chr6 (43-335)||(26623367-26623663)
chr6 (17-93)||(26623636-26623712)
chr6 (17-93)||(26729613-26729689)
chr6 (206-259)||(26647031-26647084)
chr6 (206-259)||(26752999-26753052)
chr6 (206-243)||(26802998-26803035)
chr6 (206-240)||(27610716-27610750)
chr6 (206-243)||(25539095-25539132)
chr6 (206-259)||(27592598-27592651)
chr6 (206-259)||(27604281-27604334)
chr6 (206-259)||(27677197-27677250)
chr6 (206-259)||(27679502-27679555)
chr6 (206-259)||(27705981-27706034)
[»] chr4 (3 HSPs)
chr4 (207-243)||(18679149-18679185)
chr4 (207-243)||(18723674-18723710)
chr4 (207-243)||(18731093-18731129)


Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 31284637 - 31284953
Alignment:
Q  20 cttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaacattttttatttatatatttaaacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284637 cttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaacattttttatttatatatttaaacaa 31284736  T
Q  120 atactagttattgtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgattgnnnnnnnatttgttcaccaacttatcttgttg 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  31284737 atattagttattgtatgtcaaaacaattagaattgtatgatatattcgtcaagatatagatgtgattgtttttttatttgttcaccaacttatcttgttg 31284836  T
Q  220 ggcatgaatagatatgaatacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtgattgtagtcagaggtactctacttcccttt 319  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31284837 ggcatgaatagatatgaatacaagcttactgggaagatagcttttaatcagacaccagacttgtcaagtgattgtagtcagaggtactctacttcccttg 31284936  T
Q  320 aatcttgttttgccttt 336  Q
    |||||||||||||||||    
T  31284937 aatcttgttttgccttt 31284953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 43 - 335
Target Start/End: Original strand, 26729345 - 26729640
Alignment:
Q  43 ttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaac---attttttatttatatatttaaacaaatactagtta-ttgtatgtc 138  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||| ||| || |||||| ||    
T  26729345 ttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtttatatatttaaacaaatattaggtatttgtatatc 26729444  T
Q  139 aaaacaattagaattgtatgatatattcgtcaagatatagatgtgattgnnnnnnnatttgttcaccaacttatcttgttgggcatgaatagatatgaat 238  Q
    |||||| |||||||||||||| ||| | || |||||||| ||||||||        |||||| || |||   |||||||| ||||| |||||||||||||    
T  26729445 aaaacatttagaattgtatgacataattgttaagatataaatgtgattatttttttatttgtgcaacaa---atcttgtt-ggcattaatagatatgaat 26729540  T
Q  239 acaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtg---attgtagtcagaggtactctacttccctttaatcttgttttgcctt 335  Q
    |||||||| || |||||||| || || | |||||||| |||| |||||| |   ||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  26729541 acaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtcaagggtactctacttcacttgaatcttgttttgcctt 26729640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 43 - 335
Target Start/End: Original strand, 26623367 - 26623663
Alignment:
Q  43 ttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaac---attttttatttatatatttaaacaaatactagtta-ttgtatgtc 138  Q
    |||||||||| ||||||| |||||||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||| ||| || |||||| ||    
T  26623367 ttcttcaattcttattccccaatcattccatattaatgcttaaaagggaaacacaattttttgtttatatatttaaacaaatattaggtatttgtatatc 26623466  T
Q  139 aaaacaattagaattgtatgatatattcgtcaagatatagatgtgatt-gnnnnnnnatttgttcaccaacttatcttgttgggcatgaatagatatgaa 237  Q
    |||||| |||||||||||||| ||| | || |||||||| ||||||||         |||||| || |||   |||||||| ||||| ||||||||||||    
T  26623467 aaaacatttagaattgtatgacataattgttaagatataaatgtgattattttttttatttgtgcaacaa---atcttgtt-ggcattaatagatatgaa 26623562  T
Q  238 tacaagcttgctgggaagatagcttttaatcagacaccagacttgtcaagtg---attgtagtcagaggtactctacttccctttaatcttgttttgcct 334  Q
    ||||||||| || |||||||| || || | |||||||| |||| |||||| |   ||||||||||  ||||||||||||| ||| |||||||||||||||    
T  26623563 tacaagcttactaggaagataactcttgaccagacaccggactcgtcaagcgaccattgtagtcaagggtactctacttcacttgaatcttgttttgcct 26623662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 26623636 - 26623712
Alignment:
Q  17 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 93  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26623636 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26623712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 26729613 - 26729689
Alignment:
Q  17 ctacttcacttcaatcttgttttgccttcttcaatttttattcctcaatcattccatataaatgcttaaaagggaaa 93  Q
    ||||||||||| ||||||||||||||||||| | ||| ||||||| |||||||| || | || ||||||| ||||||    
T  26729613 ctacttcacttgaatcttgttttgccttctttattttatattcctaaatcattcaatcttaaagcttaaatgggaaa 26729689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 26647031 - 26647084
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||||| || |||||||||||||||||||||| ||  |||||||||||    
T  26647031 aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag 26647084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 26752999 - 26753052
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||||| || |||||||||||||||||||||| ||  |||||||||||    
T  26752999 aacttatcttgtgggacatgaatagatatgaatacaagtttattgggaagatag 26753052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 26802998 - 26803035
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaag 243  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  26802998 aacttatcttgttggacatgaatagatatgaatacaag 26803035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 27610750 - 27610716
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatac 240  Q
    |||||||||| ||||||||||||||||||||||||    
T  27610750 aacttatcttattgggcatgaatagatatgaatac 27610716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 25539095 - 25539132
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaag 243  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  25539095 aacttatcttattggacatgaatagatatgaatacaag 25539132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27592651 - 27592598
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27592651 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27592598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27604334 - 27604281
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||| |||| ||||||||||||||||||| |||||  ||| |||||||    
T  27604334 aacttatcttattggacatgaatagatatgaatacgagcttattggaaagatag 27604281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27677250 - 27677197
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27677250 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27677197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 27679502 - 27679555
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27679502 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27679555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 27706034 - 27705981
Alignment:
Q  206 aacttatcttgttgggcatgaatagatatgaatacaagcttgctgggaagatag 259  Q
    |||||||||| |||  |||||||||||||||||||||||||  ||| |||||||    
T  27706034 aacttatcttattgcacatgaatagatatgaatacaagcttattggaaagatag 27705981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 18679185 - 18679149
Alignment:
Q  207 acttatcttgttgggcatgaatagatatgaatacaag 243  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18679185 acttatcttattggacatgaatagatatgaatacaag 18679149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 18723710 - 18723674
Alignment:
Q  207 acttatcttgttgggcatgaatagatatgaatacaag 243  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18723710 acttatcttattggacatgaatagatatgaatacaag 18723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 18731129 - 18731093
Alignment:
Q  207 acttatcttgttgggcatgaatagatatgaatacaag 243  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  18731129 acttatcttattggacatgaatagatatgaatacaag 18731093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University