View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_34 (Length: 345)
Name: NF10273_low_34
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 26285533 - 26285201
Alignment:
| Q |
1 |
tacatcccctcttctttttt-cttatctacgtctcctctcctctatctttttattaatgtcttactcagtgaattgagatttttgcttttcattttattt |
99 |
Q |
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| T |
26285533 |
tacatcccctcttctttttttcttatctacgtctcctctcctctatctttttattaatgtcttactcagtgaattgagatttttgcttttcattttattg |
26285434 |
T |
|
| Q |
100 |
ggtatggaggacatcaaacaagggatggaatcacactaaaccatataaaaagaaagtcgatacaaagaaccataatgactcatcaccattgctgaattgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26285433 |
ggtatggaggacatcaaacaagggatggaatcacactaaaccatataaaaagaaagtcgatacaaagaaccataatgactcatcaccattgctgaattgt |
26285334 |
T |
|
| Q |
200 |
ctaagtttctaaatgtgttaatagtcatagttggaagttatttaatccaagtcaactactttatttctaaaatactgcaatgcatagtttaagaattttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
26285333 |
ctaagtttctaaatgtgttaatagtcatagttggaagttatttaatccaagtcaactactttatttctaaaatactgcaatgcacattttaagaattttg |
26285234 |
T |
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| Q |
300 |
caactttaacctccattttgtttatgtggtttc |
332 |
Q |
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| T |
26285233 |
caactttaacctccattttgtttatgtggtttc |
26285201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 39186109 - 39186246
Alignment:
| Q |
73 |
ttgagatttttgcttttcattttatttggtatggaggacatcaaacaagggatggaatcacactaaaccatataaaaagaaagtcgatacaaagaaccat |
172 |
Q |
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| T |
39186109 |
ttgagatttttggttttcattttatttggtatggagaacatcaaacaagggatggaatcacaccgagccatataaaaagaaagtaaatccaaagaaccat |
39186208 |
T |
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| Q |
173 |
aatgactcatcaccattgctgaat-tgtctaagtttct |
209 |
Q |
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| T |
39186209 |
aatgactcatcaccactgctgaatgtgtctaagtttct |
39186246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 39186370 - 39186457
Alignment:
| Q |
226 |
atagttggaagttatttaatccaagtcaactactttatttctaaaatactgcaat--gcatagtttaagaattttgcaactttaacctc |
312 |
Q |
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|||||||||||| ||||||| ||| |||||||||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||| |
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| T |
39186370 |
atagttggaagtcatttaattcaaatcaactacttaatt-ctaaattactgcgatatgcatgtattaagaattttgcaactttaacctc |
39186457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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