View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_38 (Length: 321)
Name: NF10273_low_38
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 51106181 - 51106488
Alignment:
| Q |
1 |
taacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106181 |
taacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccatttt |
51106280 |
T |
|
| Q |
101 |
gaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgagcaccctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51106281 |
gaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgagcaccctctt |
51106380 |
T |
|
| Q |
201 |
tgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgctatgctgtctggccacaacgatcttttgcatttatatctccaccatgatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
51106381 |
tgagtaaaaggtctgcaacctcaacagaaccccgtacggcactccaatgcaatgctgtctagccactacgatcttttgcatttatatctccaccatgatc |
51106480 |
T |
|
| Q |
301 |
aatgatgt |
308 |
Q |
| |
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|||||||| |
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| T |
51106481 |
aatgatgt |
51106488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 51115517 - 51115824
Alignment:
| Q |
1 |
taacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccatttt |
100 |
Q |
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||||||||||| || ||||||| |||||||||| |||||||||||||||| ||||||||||| ||||||||| |||| ||||| ||||| ||||||||| |
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| T |
51115517 |
taacagaagacatataaaatcagcaaaacctttgtaagcagcccaatgcaaggggcttcttccttcattatcaggaacatcaggctcagcgttccatttt |
51115616 |
T |
|
| Q |
101 |
gaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgagcaccctctt |
200 |
Q |
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||||||| ||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
51115617 |
gaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcagcaccctctt |
51115716 |
T |
|
| Q |
201 |
tgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgctatgctgtctggccacaacgatcttttgcatttatatctccaccatgatg |
300 |
Q |
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|||||||||| ||||||||||||| | |||| || || |||||||||||| |||| || |||||| ||||||| |||| ||||||||||||||||||| |
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| T |
51115717 |
tgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcgtttatatctccaccatgatc |
51115816 |
T |
|
| Q |
301 |
aatgatgt |
308 |
Q |
| |
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||||||| |
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| T |
51115817 |
gatgatgt |
51115824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 297
Target Start/End: Complemental strand, 48033900 - 48033760
Alignment:
| Q |
157 |
ctgatacccatccttgtcagcagaattcaattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgctatgct |
256 |
Q |
| |
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||||||||||| | ||||||||| |||| | |||||||||||| |||||| || |||||||||| || || |||||| || |||||||||||| ||||| |
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| T |
48033900 |
ctgatacccattcatgtcagcagcgttcactcgagcaccctcttggagtaatagctctgcaacctgaatagcaccccgaaccgcactccaatgcaatgct |
48033801 |
T |
|
| Q |
257 |
gtctggccacaacgatcttttgcatttatatctccaccatg |
297 |
Q |
| |
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||||||||| || ||||| ||||||||| |||||||||||| |
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| T |
48033800 |
gtctggccagaatgatctgttgcatttacatctccaccatg |
48033760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 48034221 - 48034113
Alignment:
| Q |
43 |
ccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagca |
142 |
Q |
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||||||||| |||| ||||||||| |||||| || | ||||||||||||||||||||||||| || | ||||||||||| || ||| ||||||||||| |
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| T |
48034221 |
ccaatgcaaggggcatcttccatctttatcaggagcatcagggtcagcattccattttgaaataacatagtaaaggaaagccgtctgaccatattgagca |
48034122 |
T |
|
| Q |
143 |
gcaacatgt |
151 |
Q |
| |
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||||||||| |
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| T |
48034121 |
gcaacatgt |
48034113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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