View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_4 (Length: 608)
Name: NF10273_low_4
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 20684120 - 20684712
Alignment:
| Q |
1 |
actttaatttgatttattgaatgagaggaggaattccaaaaataggtttgggcaggtggtggcattggaccactctcaaagtcctatatacatataagaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20684120 |
actttaatttgatctattgaatgagaggaggaattccaaaaataggtttgggcaggtggtggcattggaccactctcaaagtcctatatacatataagaa |
20684219 |
T |
|
| Q |
101 |
gacagttacaggcagaggaaccacnnnnnnnngctcatagcattagcaaaacaaccaataaaaggaaaaaagagataacacacaatgacacatatctctc |
200 |
Q |
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| T |
20684220 |
gacagttacaggcagaggaatcacaaaaaaa-gcttatagcattagcaaaacaaccaataaaaggaaaaaagagataacacacaatgacacatatctctc |
20684318 |
T |
|
| Q |
201 |
acctcaccattaggtacatatacatggatatttaggggcacacagtcgcacatgtaaagtcagagagataacacacaatgactcagttatgatacggtca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20684319 |
acctcaccattaggtacatatacatggatatttaggggcacacagtcgcacatgtaaagtcagagagataacacacaatgactcagttatgatacggtca |
20684418 |
T |
|
| Q |
301 |
atttggtctcaatttagtgaaatcaatttattttgtaaattttcattaactattaatattattactttattttctaaccaatcaaacaatttaaatcaac |
400 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20684419 |
atttagtctcaatttagtgaaatcaatttattttgtaaattttcattaattattaatattattactttattttctaaccaatcaaaaaatttaaatcaac |
20684518 |
T |
|
| Q |
401 |
tcaaactggccaaatgaaaaattgactnnnnnnntagccaatagtaccagggcaaatgaaatggacggattgtaggaccagaaaattgattccaaattaa |
500 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20684519 |
tcaaactggccaaatgaaaaattgactaaaaaaatagccaatagtaccagggcaaatgaaatggacggattgtaggaccagaaaattgattccaaattaa |
20684618 |
T |
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| Q |
501 |
tcttaccaaatggtttggcgtaattgtactaggtgcctaaaagtacgacattttggttttcatatttaatacagggtaggttgatatatttttt |
594 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20684619 |
tcttaccaaatggtttggcgtaattgtaccaggtgcctaaaagtacgacattttggtattcatatttaatacagggtaggttgatatatttttt |
20684712 |
T |
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