View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10273_low_40 (Length: 319)
Name: NF10273_low_40
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 48593113 - 48592814
Alignment:
| Q |
1 |
tttctagtaactatatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48593113 |
tttctagtaactatatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgcccattccacggagatggcagtagtgt |
48593014 |
T |
|
| Q |
101 |
cggttgctgccgtaaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggtnnnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593013 |
cggttgctgccgtaaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggtcaaaaa |
48592914 |
T |
|
| Q |
201 |
nnnnncttttataattacataaaaagtatgaggagaagttatatacataccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
48592913 |
aaaaa---ttataattacataaaaagtatgaggagaagttatatacgtaccaatattaatgatttgatatgatttctagtaaagttgacttcacagtttt |
48592817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 48597724 - 48597531
Alignment:
| Q |
1 |
tttctagtaactatatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48597724 |
tttctagtaactatatccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgcccattccacggagatggcagtagtgt |
48597625 |
T |
|
| Q |
101 |
cggttgctgccgtaaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597624 |
cggttgctgccgtaaagtaatcctgacatttattattttttgaagaaataatttaataacaataatccaacaatgttttataacttactagggt |
48597531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 248 - 303
Target Start/End: Complemental strand, 48602564 - 48602509
Alignment:
| Q |
248 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48602564 |
taccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttct |
48602509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 48597519 - 48597488
Alignment:
| Q |
209 |
ttataattacataaaaagtatgaggagaagtt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48597519 |
ttataattacataaaaagtatgaggagaagtt |
48597488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 23231163 - 23231270
Alignment:
| Q |
19 |
acctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccgtaaagt |
118 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| ||||| || |||| |
|
|
| T |
23231163 |
acctcctcttgagcttttttcaacacccttggattgttaaacagttctgatattgcccattcgactgagatggcagtagtgtcggtagctgctgtgaagt |
23231262 |
T |
|
| Q |
119 |
aatcctga |
126 |
Q |
| |
|
|||||||| |
|
|
| T |
23231263 |
aatcctga |
23231270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 23223415 - 23223525
Alignment:
| Q |
16 |
tccacctcctcttgtgcttttttcagcacccttggattgttaaacagttctgatattgtccattccacggagatggcagtagtgtcggttgctgccgtaa |
115 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||||||||| |||||||||| |||||||||||||| || |||||||| || || || ||||| || | |
|
|
| T |
23223415 |
tccacctcttcttgtgctttcttcagtactattggattgttgaacagttctgctattgtccattccaatgaaatggcagttgtatctgtagctgctgtga |
23223514 |
T |
|
| Q |
116 |
agtaatcctga |
126 |
Q |
| |
|
||||||||||| |
|
|
| T |
23223515 |
agtaatcctga |
23223525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 23231443 - 23231518
Alignment:
| Q |
228 |
atgaggagaagttatatacataccaatattaatgatttgatatgatttctagtaaagttgacttcacggtctttct |
303 |
Q |
| |
|
||||||||||| | |||| |||||| || ||||||||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
23231443 |
atgaggagaagatgtatatgtaccaagatcaatgatttgatatgacttctagtaaaattgacttcaaggtctttct |
23231518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University