View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10273_low_45 (Length: 276)
Name: NF10273_low_45
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 45650550 - 45650350
Alignment:
| Q |
68 |
atattgtaattgttttataaattgatttacttaaaacagcgaatctataacttactccgtagaagatataaaaactttgtnnnnnnnnnnnnnnntattc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45650550 |
atattgtaattgttttataaattgatttacttaaaacagcgaatctataacttactccgtagaagatataaaaactttgtaaaaaaatgaaaaaatattc |
45650451 |
T |
|
| Q |
168 |
tgtggaagaaattgacgagaattaaaacaagaaatagtcataataagcaggtaa--tataacaagcatataatttaaattaaaaacgtgatcagacctat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45650450 |
tgtggaagaaattgacgagaattaaaacaagaaatagtcataataagcaggtaatatataacaagcatataatttaaattaaaaacgtgatcagacctat |
45650351 |
T |
|
| Q |
266 |
g |
266 |
Q |
| |
|
| |
|
|
| T |
45650350 |
g |
45650350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University