View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_47 (Length: 273)
Name: NF10273_low_47
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 19588008 - 19588269
Alignment:
| Q |
2 |
gaagaggacgataatttgaaatctctcaaagtcactgagtcacagaagagtgattttaatgttcatgattggtggaataattctattgatgatatggatt |
101 |
Q |
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| T |
19588008 |
gaagaggaggataatttgaaatctctcaaagtcactgagtcacaaaagagtgattttaatgtccatgattggtggaataattctattgatgatatggatt |
19588107 |
T |
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| Q |
102 |
tagcatctcttgaagacttcaagaattctttggacagtttcaagaacaatttacgtgcagcaagccaagcagagaagtccaatttacatccaaatttaaa |
201 |
Q |
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| T |
19588108 |
tagcatctcttgaagacttcaaaaattctttggacagtttcaagaataatttacgtgcagcaagccaagcagagaagtccaatttgcatccaaatttaaa |
19588207 |
T |
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| Q |
202 |
cattgctacttaagagtacttatgttaataatagtgatatttcaacttatgtgtgacctttg |
263 |
Q |
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| T |
19588208 |
cattgctacttaagagtacttatgttaataatagtgatatttcaacttatgtgtgacctttg |
19588269 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 12895548 - 12895676
Alignment:
| Q |
66 |
atgattggtggaataattctattgatgatatggatttagcatctcttgaagacttcaagaattctttggacagtttcaagaacaatttacgtgcagcaag |
165 |
Q |
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| T |
12895548 |
atgattggtggaataaatctattgatgatatggatttaacatctcttgaagatattaccacttctttggataaattgaagattaatttatcagtagcaag |
12895647 |
T |
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| Q |
166 |
ccaagcagagaagtccaatttacatccaa |
194 |
Q |
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| T |
12895648 |
ccaagccaagaagttcaatttacatccaa |
12895676 |
T |
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