View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_48 (Length: 273)
Name: NF10273_low_48
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 43560991 - 43560742
Alignment:
| Q |
20 |
gaatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaata |
119 |
Q |
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| T |
43560991 |
gaatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaata |
43560892 |
T |
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| Q |
120 |
ccgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcat |
219 |
Q |
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| T |
43560891 |
ccgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcat |
43560792 |
T |
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| Q |
220 |
tattcgcgaaaaagatacaatatagggtagaactcatacctttgcttctc |
269 |
Q |
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| T |
43560791 |
tattcgcgaaaaagatacaatatagggtagaactcatacctttgtttctc |
43560742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 17730170 - 17730417
Alignment:
| Q |
21 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
120 |
Q |
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| T |
17730170 |
aatggaatggttctgtggagggatctgaacaagtctttagagagcaccttgatcacatggccatgcataaacaagaattgaaaaacgagcttacaaatat |
17730269 |
T |
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| Q |
121 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
220 |
Q |
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| T |
17730270 |
cgatgacgagcttatggaggttcgctcaaacttgaaggaagctctaaaggccagagccaaactggcttctttagagttcaatattttgtctcctaccatt |
17730369 |
T |
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| Q |
221 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgcttct |
268 |
Q |
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| T |
17730370 |
attcgcgaaaaagatacaatatagggtagaatttatacctttgtttct |
17730417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 127 - 268
Target Start/End: Complemental strand, 43570167 - 43570028
Alignment:
| Q |
127 |
cgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcattattcgc |
226 |
Q |
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| T |
43570167 |
cgagcttatggaggttcgctcgaagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttctcctagcattattcgt |
43570068 |
T |
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| Q |
227 |
gaaaaagatacaatatagggtagaactcatacctttgcttct |
268 |
Q |
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| T |
43570067 |
gaaaaagataca--atagggtagaacttatgcctttgtttct |
43570028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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