View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_49 (Length: 270)
Name: NF10273_low_49
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 26649093 - 26649334
Alignment:
| Q |
13 |
aacctgtgatacataatagctttcattgataataattattagtggtgactaaacgtgaagggactgaactagagtttgttatgcagatcatggcaatatt |
112 |
Q |
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| T |
26649093 |
aacctgtgatacataatagctttcattgataataattattagtggcgactaaacgtgaagggactgaactagagtctgttatgcagatcatggcaatatt |
26649192 |
T |
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| Q |
113 |
gaagccaatgacgatatcgattttgttaaatgaagagcataatctggagtatcacttttttctgttgactaaaatagttttaggagcatattttgcattt |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649193 |
gaagccaatgacgatatcgattttgttatatgaagagcataatctggagtatcacttttttctgttgactaaaatagttttaggagcatattttgcattt |
26649292 |
T |
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| Q |
213 |
gctttgttgagaatgaaaggtgatatatgattcttccgtatc |
254 |
Q |
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| T |
26649293 |
gctttgttgagaatgaaaggtgatatatgattcttccgtatc |
26649334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 20014333 - 20014141
Alignment:
| Q |
13 |
aacctgtgatacataatagctttcattgataataattattagtggtgactaaacgtgaagggactgaactagagtttgttatgcagatcatggcaatatt |
112 |
Q |
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| T |
20014333 |
aacctgtgctacaaaatagccttcattggtagtaactagtagtggtgattacatgtgaagggaatgaa------tctgttatgaagatcatggaaatatt |
20014240 |
T |
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| Q |
113 |
gaagccaatgacgatatcgattttgttaaatgaagagcataatctggagtatcacttttttctgttgactaaaatagttttaggagcatattttgcatt |
211 |
Q |
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| T |
20014239 |
gaagtcaatgaagatattgattttgttatatgaaaagcatagtttagagtatcactttattctgttgactaaaataattttaggagcatattttgcatt |
20014141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 19904750 - 19904678
Alignment:
| Q |
92 |
tatgcagatcatggcaatattgaagccaatgacgatatcgattttgttaaatgaagagcataatctggagtat |
164 |
Q |
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| T |
19904750 |
tatgtagatcatgacgatattgaattcatttatgatattgattttgttatatgaagagcataatctagagtat |
19904678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 26353004 - 26352819
Alignment:
| Q |
24 |
cataatagctttcattgataataattattagtggtgactaaacgtgaagggactgaactagagtttgttatgcagatcatggcaatattgaagccaatga |
123 |
Q |
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| T |
26353004 |
cataatagctttcatcggtagtaattagtagcggtgagtaaatgtgaagggaccgaacttgagtctttta-gtagatcatggcaatattgaagtcaatga |
26352906 |
T |
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| Q |
124 |
cgatatcgattttgttaaatgaagagcataatctggagtatcactt-ttttctgttgactaaaatagttttaggagcatattttgca |
209 |
Q |
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| T |
26352905 |
agatattgattttgttattcgaagagcataatctagagtatcactttttttctgttgactaaaataattttaggagcatattttgca |
26352819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 9817060 - 9817138
Alignment:
| Q |
91 |
ttatgcagatcatggcaatattgaagccaatgacgatatcgattttgttaaatgaagagcataatctggagtatcactt |
169 |
Q |
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| T |
9817060 |
ttatgtagatcatggcaatattgaagtcagtgaaaatattgattttgagatatgaagagcttaatctagagtatcactt |
9817138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 1719105 - 1719258
Alignment:
| Q |
17 |
tgtgatacataatagctttcattgataataattattagt-ggtgactaaacgtgaagggactgaactagagtttgttatgcagatcatggcaatattgaa |
115 |
Q |
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|||| ||||||| ||||||||||| || ||| || |||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1719105 |
tgtgctacataacagctttcattggtagtaaatagtagtaggtgactaaatgtgaagggactgaactagaggctgttatgcagatcatggcaatattgaa |
1719204 |
T |
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| Q |
116 |
gccaatgacgatatcgattttgttaaatgaagagcataatctggagtatcactt |
169 |
Q |
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| T |
1719205 |
gtcattgaagatattgattttgttatatgaagagtgtaatcgagagtatcactt |
1719258 |
T |
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