View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_58 (Length: 252)
Name: NF10273_low_58
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4891447 - 4891688
Alignment:
| Q |
1 |
tcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttattcattatagttttgtgttttgtt |
100 |
Q |
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| T |
4891447 |
tcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttattcattatagttttgtgttttgtt |
4891546 |
T |
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| Q |
101 |
tcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacatagca |
200 |
Q |
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| T |
4891547 |
tcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaaaaagagtttctttcaaatgacatagca |
4891646 |
T |
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| Q |
201 |
agtatttttcaacaagaggaaaatttccaacatcaacctttg |
242 |
Q |
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| T |
4891647 |
agtatttttcaacaagaggaaaatttccaacatcaacctttg |
4891688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 4916400 - 4916540
Alignment:
| Q |
98 |
gtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacata |
197 |
Q |
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| T |
4916400 |
gtttcagctatttgaagaaaatgaaatagagggttgtgatttgtttcaacaatgcgaacaaaacttgtttggtgaagaagagcttatttcacatgacata |
4916499 |
T |
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| Q |
198 |
gcaagtatttttcaacaagaggaaaatttccaacatcaacc |
238 |
Q |
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| T |
4916500 |
gcaagtatttttcaacaagaggaaaatttgcaacaacaacc |
4916540 |
T |
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