View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_6 (Length: 566)
Name: NF10273_low_6
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 35953144 - 35953704
Alignment:
| Q |
1 |
atcttgttttggaaaaaacatctcgcaaacatgtcataagttgtttcgtatatactccctaaaatataaattattttcataactatcatagcgtagagtt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35953144 |
atcttgttttggacaaaacatctcgcaaacatgtcataagttgtttcgtatatactccctaaaatataaattattttcataactatcgtagcgtagagtt |
35953243 |
T |
|
| Q |
101 |
catagaaataagtcgaaaacgattcatgacattaattataaatgtgtctaagtcgactctgtttaacgatttcatatgta------------aataaact |
188 |
Q |
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|||||| |||||||||||| |||||| || |||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||||| |
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| T |
35953244 |
ggtagaaacaagtcgaaaacggttcatggcactaattataaatgtgtctaggtcaactctctttaacgatttcatatgtacttatgtcagcaaataaact |
35953343 |
T |
|
| Q |
189 |
caaataaattaacgaaataaactcgtatattttgataaannnnnnnaaaatgagtaaagtggtcataccctcaagcacttgccgcaagagtctctgccat |
288 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35953344 |
caaataaattaacgaaataaactcgtatatttcgataattttttctaaaatgagtaaagtggtcataccctcaagcacttgccgcaagagtctctgccat |
35953443 |
T |
|
| Q |
289 |
gagggccctggggtccacaaaaggcagtccagccatacttttgacgccatgacaagggctggttggcatcccaggtagcacagtatacactggcagtgtt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
35953444 |
gagggccctggggtccacaaaaggcagtccagccatacttttgacgccatgacaagggctggttggcatcccatgtagcacagtaaacactggcagtgtt |
35953543 |
T |
|
| Q |
389 |
gtagtcccagttaatattctgagggttgtaaaggtggtatgttgccctaacgttgtttgcactctgaccattcactaacatcattcccacaaggaaacac |
488 |
Q |
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| T |
35953544 |
gtagttccagttaatattctgagggttgtaaaggtggtatgttgccctaacgttgtttgcactctgaccattcactaacatcgttcccacaaggaaacac |
35953643 |
T |
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| Q |
489 |
aaaaccaacaagctcaaagttctctgtgtgctcaccattttctcttttttgtgtgtttcat |
549 |
Q |
| |
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| T |
35953644 |
aaaaccaacaagctcaaagttctctgtgtgctcaccattttctcttttttgtgtgtttcat |
35953704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 252 - 549
Target Start/End: Original strand, 35947869 - 35948166
Alignment:
| Q |
252 |
cataccctcaagcacttgccgcaagagtctctgccatgagggccctggggtccacaaaaggcagtccagccatacttttgacgccatgacaagggctggt |
351 |
Q |
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| T |
35947869 |
cataccctcaaacacttgccgcaagagtctctaccacgagggccctggggtccacaaaaggcagtccaaccatactttttacgccattccaagggctggt |
35947968 |
T |
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| Q |
352 |
tggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatattctgagggttgtaaaggtggtatgttgccctaacgttgtttgcact |
451 |
Q |
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| T |
35947969 |
ttgcatcccaggtagcacagtatacactggctctgttgtaatcccaattaatattctgagggttgtaaaggtggtacgttgaccttacaccgtttgcact |
35948068 |
T |
|
| Q |
452 |
ctgaccattcactaacatcattcccacaaggaaacacaaaaccaacaagctcaaagttctctgtgtgctcaccattttctcttttttgtgtgtttcat |
549 |
Q |
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| T |
35948069 |
ctgaccactcactaacatcattcccacaaggaaacaaaataccaacaagctcaactttctctgtgtgctctccattttctcttttgtgcgtgtttcat |
35948166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 235 - 549
Target Start/End: Original strand, 35939780 - 35940093
Alignment:
| Q |
235 |
aaaatgagtaaagtggtcataccctcaagcacttgccgcaagagtctctgccatgagggccctgg-ggtccacaaaaggcagtccagccatacttttgac |
333 |
Q |
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|||||||| ||||||| ||||| ||||||| ||||||||||| |||||||| || ||||| | |||||||||||||||||||| ||||| || || |
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| T |
35939780 |
aaaatgagaaaagtggacatacagtcaagcatttgccgcaagaatctctgcc-tgttggcccagctggtccacaaaaggcagtccaaccatatttgctac |
35939878 |
T |
|
| Q |
334 |
gccatgacaagggctggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatattctgagggttgtaaaggtggtatgttgc |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
35939879 |
gccatgacaagggctggttggcatcccaggtagcacagtatacactggcagtgttgtagtcccagttaatattctgagggttgtaattattgtatgttgc |
35939978 |
T |
|
| Q |
434 |
cctaacgttgtttgcactctgaccattcactaacatcattcccacaaggaaacacaaaaccaacaagctcaaagttctctgtgtgctcaccattttctct |
533 |
Q |
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||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||| | |||||||||| |
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| T |
35939979 |
ccttacgttgtttgcactctgaccactcactaacatcgttcccacaaggaaacacaataccaacaagcttaactttctctgtgtgttttccattttctca |
35940078 |
T |
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| Q |
534 |
tttttgtgtgtttcat |
549 |
Q |
| |
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|||| |||||||||| |
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| T |
35940079 |
atttt-tgtgtttcat |
35940093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 35929119 - 35929180
Alignment:
| Q |
300 |
ggtccacaaaaggcagtccagccatacttttgacgccatgacaagggctggttggcatccca |
361 |
Q |
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|||||||| ||||||||||| ||||| || |||||||||||||||||||| |||||||| |
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| T |
35929119 |
ggtccacagaaggcagtccaaccatatttgctacgccatgacaagggctggtctgcatccca |
35929180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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