View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_low_64 (Length: 244)

Name: NF10273_low_64
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_low_64
NF10273_low_64
[»] scaffold1315 (2 HSPs)
scaffold1315 (1-74)||(1144-1217)
scaffold1315 (155-222)||(996-1063)
[»] scaffold1293 (2 HSPs)
scaffold1293 (1-74)||(854-927)
scaffold1293 (155-222)||(1008-1075)
[»] chr4 (3 HSPs)
chr4 (1-74)||(42756955-42757032)
chr4 (155-222)||(42757113-42757180)
chr4 (3-72)||(39977911-39977979)
[»] chr2 (2 HSPs)
chr2 (1-73)||(6466792-6466863)
chr2 (156-218)||(6466646-6466708)
[»] chr1 (1 HSPs)
chr1 (10-72)||(22635700-22635762)


Alignment Details
Target: scaffold1315 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1217 - 1144
Alignment:
Q  1 taagaggaacaacatggtaaaaaatgtgagttggtggctatttcatagaggggtgtctttgtttctttctttag 74  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  1217 taagaggaacaacatgataaaaaatgtgagttggtggctatttcgtagaagggtgtctttgtttctttctttag 1144  T

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Target: scaffold1315; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 1063 - 996
Alignment:
Q  155 ctaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt 222  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1063 ctaaggagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt 996  T

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Target: scaffold1293 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 854 - 927
Alignment:
Q  1 taagaggaacaacatggtaaaaaatgtgagttggtggctatttcatagaggggtgtctttgtttctttctttag 74  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  854 taagaggaacaacatgataaaaaatgtgagttggtggctatttcgtagaagggtgtctttgtttctttctttag 927  T

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Target: scaffold1293; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 1008 - 1075
Alignment:
Q  155 ctaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt 222  Q
    ||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1008 ctaagaagagtgtgttttatcattgacaatataattaataaaatgagttgctgataatttatgatttt 1075  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42756955 - 42757032
Alignment:
Q  1 taagaggaacaacatggtaaaaaatgtgagttggtggctatttcatagag----gggtgtctttgtttctttctttag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  42756955 taagaggaacaacatggtaaaaaatgtgagttggtggctatttcatagagaggtgggtgtctttgtttctttctttag 42757032  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 42757113 - 42757180
Alignment:
Q  155 ctaaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatgatttt 222  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42757113 ctaagaagagtgtgttttatcattgacaatataattaatagaatgagttgctgataatttatgatttt 42757180  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 39977979 - 39977911
Alignment:
Q  3 agaggaacaacatggtaaaaaatgtgagttggtggctatttcatagaggggtgtctttgtttctttcttt 72  Q
    ||||| |||||||||||||||| ||| |||||||||  ||||| |||||| ||| ||| |||||||||||    
T  39977979 agaggcacaacatggtaaaaaaggtgggttggtggcagtttcaaagagggatgt-tttttttctttcttt 39977911  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6466863 - 6466792
Alignment:
Q  1 taagaggaacaacatggtaaaaaatgtgagttggtggctatttcatagaggggtgtctttgtttctttcttta 73  Q
    |||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||    
T  6466863 taagaggaacaaaatggtaaaaa-tgtgagttggtgactattacatagaggggtgtctttgttcctttcttta 6466792  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 6466708 - 6466646
Alignment:
Q  156 taaggagagtgtgttttataattgacaatataattaatagaatgagttgctgataatttatga 218  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  6466708 taaggagggtgtgttttatatgtgacaatataattaatagaatgagttgcagataatttatga 6466646  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 22635700 - 22635762
Alignment:
Q  10 caacatggtaaaaaatgtgagttggtggctatttcatagaggggtgtctttgtttctttcttt 72  Q
    ||||||||||||||||||||||| |||||  ||| ||| | ||||||||||||| ||||||||    
T  22635700 caacatggtaaaaaatgtgagtttgtggcggttttatacaagggtgtctttgttcctttcttt 22635762  T

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