View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_7 (Length: 537)
Name: NF10273_low_7
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 39074824 - 39075251
Alignment:
| Q |
18 |
catagttcctccgatgaactgaaaaattaagataaatgttcatcaacgttcggaaccttcgttggagatactccaaggtttgcaaaatcaagcaagaaaa |
117 |
Q |
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| T |
39074824 |
catagttcctccgatgaactgaaaaattaagataaatgttcatcaacgttcggaaccttcgttggagatactccaaggtttgcaaaatcaagcaagaaaa |
39074923 |
T |
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| Q |
118 |
taattgaatatcctatgtgccatatcaaacaaatgtttgagtgacatcaatagaccgaaccacaacatatggtttggtttggttcaaaattggcttttgt |
217 |
Q |
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| T |
39074924 |
taattgaatatcctatgtgccatatcaaacaaatgtttgagtgacatcaatagaccgaaccacaacatatggtttggtttggttcaaaattggcttttgt |
39075023 |
T |
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| Q |
218 |
ttctttctttatggttgagttttgactactaagttttacgtgacatgtgagacnnnnnnnnnacggaatgtatcagttttgttgnnnnnnnacgtaagtc |
317 |
Q |
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| T |
39075024 |
ttctttctttatggttgagttttgactactaagttttacgtgacatgtgagactttttttttacggaatgtatcagttttgttgtttttttacgtaagtc |
39075123 |
T |
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| Q |
318 |
ttgtagctgacgtacgtttgagttacttcaaacacgcaggtccatatttgttttcaagaaacttcttgttttggtcacacagttctgtttgtagtatggt |
417 |
Q |
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| T |
39075124 |
ttgtagctgacgtacgtttgagttacttcaaacacgcaggtccatatttgttttcaagaaacttcttgttttggtcacacagttctgtttgtagtatggt |
39075223 |
T |
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| Q |
418 |
ttgttttgggactaatctgattacattt |
445 |
Q |
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| T |
39075224 |
ttgttttgggactaatctgattacattt |
39075251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 39075248 - 39075304
Alignment:
| Q |
467 |
atttgtcccttcatatggctgactattttatagtgtgaaccatgtttctgatgtcca |
523 |
Q |
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| T |
39075248 |
atttgtcccttcatatggctgactattttatagtgtgaaccatttttccgatgtcca |
39075304 |
T |
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