View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_75 (Length: 238)
Name: NF10273_low_75
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32742069 - 32741846
Alignment:
| Q |
1 |
tacaaaacgtatattttacttttgtttacaaattgatatgtacatcatcatccccctaagctaaataattatataccctaaaggcagtgccaagaaattt |
100 |
Q |
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| T |
32742069 |
tacaaaacgtatattttacttttgtttacaaattgatatgtacatcatcatccccctaagctaaataattatataccctaaaggcagtgccaagaaattt |
32741970 |
T |
|
| Q |
101 |
ggcaaattcgaccatctacttccttttccggacaaaacatagactcaatcaaagaagagcaaagtagtaaactttgtcctttgattttaatcaatattta |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32741969 |
ggcaaattcgaccatctacttctttttccggacaaaacatagactcaatcaaagaagagcaaagtagtaaactttatcctttgattttaatcaatattta |
32741870 |
T |
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| Q |
201 |
tttataactataattgatctatat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
32741869 |
tttataactataattgatctatat |
32741846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 32738957 - 32738755
Alignment:
| Q |
20 |
ttttgtttacaaattgatatgtacatcatcat-ccccctaagctaaataattatataccctaaaggcagtgccaagaaatttggcaaattcgaccatcta |
118 |
Q |
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|||| |||||||||| ||||||| ||||| || |||||| |||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| |
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| T |
32738957 |
ttttttttacaaattaatatgtatatcattattccccctcggctaaataattatacacactaaaggcagtaccaagaaatttagcaaattcgaccatctg |
32738858 |
T |
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| Q |
119 |
cttccttttccggacaaaacatagactcaatcaaagaagagcaaagtagtaaactttgtcc-tttgattttaatcaat-atttatttataactataattg |
216 |
Q |
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|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||| |
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| T |
32738857 |
cttc-ttttccagtcaaaacatagactcaatcaaagaagagcaaagtagtaaactttgtccttttgattttaattaataatttattta----tataattg |
32738763 |
T |
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| Q |
217 |
atctatat |
224 |
Q |
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|||||||| |
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| T |
32738762 |
atctatat |
32738755 |
T |
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