View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10273_low_78 (Length: 228)

Name: NF10273_low_78
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10273_low_78
NF10273_low_78
[»] chr1 (20 HSPs)
chr1 (1-80)||(32742363-32742442)
chr1 (188-228)||(11241135-11241175)
chr1 (188-228)||(13136567-13136607)
chr1 (188-228)||(24190577-24190617)
chr1 (188-225)||(52985041-52985078)
chr1 (188-228)||(2126146-2126186)
chr1 (188-228)||(6786946-6786986)
chr1 (188-228)||(15959653-15959693)
chr1 (188-228)||(32624018-32624058)
chr1 (188-228)||(33369658-33369698)
chr1 (188-228)||(35691501-35691541)
chr1 (188-228)||(39555599-39555639)
chr1 (192-228)||(39932585-39932621)
chr1 (188-228)||(46543090-46543130)
chr1 (188-223)||(12448985-12449020)
chr1 (188-228)||(4672939-4672979)
chr1 (188-228)||(6785564-6785603)
chr1 (188-228)||(28016759-28016799)
chr1 (188-224)||(32742219-32742255)
chr1 (188-228)||(40718786-40718826)
[»] chr8 (14 HSPs)
chr8 (188-228)||(8709800-8709840)
chr8 (188-228)||(13143959-13143999)
chr8 (188-228)||(30575848-30575888)
chr8 (188-228)||(43216361-43216401)
chr8 (188-228)||(7022417-7022457)
chr8 (192-228)||(7858638-7858674)
chr8 (188-228)||(15824651-15824691)
chr8 (188-228)||(26483638-26483678)
chr8 (188-228)||(34890188-34890228)
chr8 (188-228)||(36190878-36190918)
chr8 (188-227)||(24892947-24892986)
chr8 (188-222)||(31734221-31734255)
chr8 (188-228)||(28348716-28348756)
chr8 (188-228)||(34158304-34158344)
[»] chr7 (11 HSPs)
chr7 (188-228)||(6191153-6191193)
chr7 (188-228)||(19912781-19912821)
chr7 (188-228)||(46760269-46760309)
chr7 (188-228)||(12632356-12632396)
chr7 (188-228)||(14805977-14806017)
chr7 (188-228)||(15252971-15253011)
chr7 (188-228)||(18102638-18102678)
chr7 (188-228)||(20123692-20123732)
chr7 (188-228)||(45486063-45486103)
chr7 (189-228)||(14574673-14574712)
chr7 (188-228)||(37767031-37767071)
[»] chr6 (6 HSPs)
chr6 (188-228)||(11082258-11082298)
chr6 (188-228)||(21542526-21542566)
chr6 (188-228)||(35129067-35129107)
chr6 (188-228)||(17751757-17751797)
chr6 (188-228)||(34177654-34177694)
chr6 (188-224)||(3095737-3095773)
[»] chr5 (12 HSPs)
chr5 (188-228)||(6686493-6686533)
chr5 (188-228)||(42273755-42273795)
chr5 (188-228)||(43589975-43590015)
chr5 (188-228)||(12729897-12729937)
chr5 (188-228)||(12792799-12792839)
chr5 (188-228)||(20039210-20039250)
chr5 (188-228)||(20644122-20644162)
chr5 (188-228)||(32019929-32019969)
chr5 (188-228)||(34425438-34425478)
chr5 (192-228)||(37522602-37522638)
chr5 (192-228)||(37562774-37562810)
chr5 (188-228)||(23233519-23233559)
[»] chr4 (20 HSPs)
chr4 (188-228)||(2229353-2229393)
chr4 (188-228)||(4058821-4058861)
chr4 (188-228)||(20281697-20281737)
chr4 (188-228)||(39078262-39078302)
chr4 (188-228)||(47867985-47868025)
chr4 (188-228)||(7654723-7654763)
chr4 (192-228)||(12002639-12002675)
chr4 (188-228)||(16473854-16473894)
chr4 (188-228)||(16604852-16604892)
chr4 (188-228)||(26916431-26916471)
chr4 (188-228)||(29203612-29203652)
chr4 (188-228)||(32280009-32280049)
chr4 (188-228)||(41414617-41414657)
chr4 (188-227)||(55580776-55580815)
chr4 (188-228)||(14332866-14332906)
chr4 (188-228)||(24940471-24940511)
chr4 (188-228)||(28669007-28669047)
chr4 (188-228)||(35310748-35310788)
chr4 (188-228)||(50080462-50080502)
chr4 (188-228)||(56318076-56318116)
[»] chr3 (17 HSPs)
chr3 (188-228)||(30189683-30189723)
chr3 (188-227)||(53270347-53270386)
chr3 (188-228)||(11054283-11054323)
chr3 (188-228)||(14752180-14752220)
chr3 (192-228)||(35963268-35963304)
chr3 (188-228)||(41476308-41476348)
chr3 (188-228)||(46711630-46711670)
chr3 (188-222)||(6438195-6438229)
chr3 (191-228)||(37042389-37042426)
chr3 (188-228)||(9264663-9264703)
chr3 (188-228)||(23910485-23910525)
chr3 (192-228)||(26208130-26208166)
chr3 (188-228)||(29235299-29235339)
chr3 (188-228)||(31837031-31837071)
chr3 (188-228)||(37075072-37075112)
chr3 (188-228)||(50651009-50651049)
chr3 (188-228)||(54464868-54464908)
[»] chr2 (12 HSPs)
chr2 (188-228)||(28599160-28599200)
chr2 (188-228)||(35517231-35517271)
chr2 (188-228)||(12938350-12938390)
chr2 (192-228)||(35115815-35115851)
chr2 (188-228)||(41528364-41528404)
chr2 (188-228)||(45085365-45085405)
chr2 (189-228)||(6110211-6110250)
chr2 (188-228)||(9864730-9864771)
chr2 (188-228)||(3201434-3201474)
chr2 (188-228)||(11617132-11617172)
chr2 (188-228)||(19264208-19264248)
chr2 (192-228)||(35023010-35023046)
[»] scaffold0300 (1 HSPs)
scaffold0300 (188-228)||(586-626)
[»] scaffold0045 (1 HSPs)
scaffold0045 (188-228)||(78065-78105)
[»] scaffold0774 (1 HSPs)
scaffold0774 (188-222)||(3447-3481)
[»] scaffold0442 (1 HSPs)
scaffold0442 (188-228)||(10153-10193)
[»] scaffold0062 (1 HSPs)
scaffold0062 (188-228)||(44784-44824)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 32742442 - 32742363
Alignment:
Q  1 gtgtttctgcctgcgtaaacataagatgaaaaattaaattttatttaacggtattgacttttaaaaagttgaatgcgtag 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32742442 gtgtttctgcctgcgtaaacataagatgaaaaattaaattttatttaacggtattgacttttaaaaagttgattgcgtag 32742363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11241135 - 11241175
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  11241135 aaagaaaacacaaaaaactatactccaaattcttatgtttt 11241175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 13136607 - 13136567
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  13136607 aaagaaaacacaaaaaactatactccaaattcttatgtttt 13136567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 24190577 - 24190617
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  24190577 aaagaaaacacaaaaaactatactccaaattcttatgtttt 24190617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 52985041 - 52985078
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgt 225  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  52985041 aaagaaaacacaaaaaactatactccaaattcttatgt 52985078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 2126146 - 2126186
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  2126146 aaagaaaacacaaaaaactatattccaaattcttatgtttt 2126186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6786946 - 6786986
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  6786946 aaagaaaacacaaaaaactatactccaaattctcatgtttt 6786986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 15959693 - 15959653
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  15959693 aaagaaaacacaaaaaattatactccaaattcttatgtttt 15959653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 32624058 - 32624018
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  32624058 aaagaaaacacaaaaaactacactccaaattcttatgtttt 32624018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 33369658 - 33369698
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  33369658 aaagaaaacacaaaaaactatactccaaatttttatgtttt 33369698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 35691501 - 35691541
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  35691501 aaagaaaacacaaaaaattatactccaaattcttatgtttt 35691541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 39555639 - 39555599
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||| || |||||||||||||||||||||    
T  39555639 aaagaaaacacaaaaacctatactccaaattcttatgtttt 39555599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 39932621 - 39932585
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  39932621 aaaacacaaaaaactatactccaaattcttatgtttt 39932585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 46543090 - 46543130
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  46543090 aaagaaaacacaaaaaactatactccaaatttttatgtttt 46543130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 12449020 - 12448985
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttat 223  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12449020 aaagaaaacacaaaaaactatactccaaattcttat 12448985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 4672939 - 4672979
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| |||||||||||||||| ||||    
T  4672939 aaagaaaatacaaaaaactatactccaaattcttatatttt 4672979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6785564 - 6785603
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  6785564 aaagaaaacacaaaaaactatactcc-aattcttatgtttt 6785603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28016799 - 28016759
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  28016799 aaagaaaacaccaaaaactatactctaaattcttatgtttt 28016759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 32742255 - 32742219
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatg 224  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  32742255 aaagaaaacacaaaaaactatactcaaaattcttatg 32742219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 40718786 - 40718826
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  40718786 aaagaaaacacaaaaaactatactccaaatttttatatttt 40718826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 8709840 - 8709800
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8709840 aaagaaaacacaaaaaactatactccaaattcttatgtttt 8709800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 13143999 - 13143959
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  13143999 aaagaaaacacaaaaaactatactccaaattcttatgtttt 13143959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 30575888 - 30575848
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  30575888 aaagaaaacacaaaaaactttactccaaatttttatgtttt 30575848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 43216401 - 43216361
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  43216401 aaagaaaacacaaaaaactatactccaaattcttatgtttt 43216361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 7022457 - 7022417
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  7022457 aaagaaaacacaaaaaactatactccaaatttttatgtttt 7022417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 7858638 - 7858674
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7858638 aaaacacaaaaaactatactccaaattcttatgtttt 7858674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 15824691 - 15824651
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  15824691 aaagaaaacacaaaaaactatacttcaaattcttatgtttt 15824651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 26483638 - 26483678
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  26483638 aaagaaaacacaaaaaactatacttcaaattcttatgtttt 26483678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34890228 - 34890188
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  34890228 aaagaaaacacaaaaaattatactccaaattcttatgtttt 34890188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 36190878 - 36190918
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  36190878 aaagaaaacacaaaaaactatactctaaattcttatgtttt 36190918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 24892947 - 24892986
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgttt 227  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  24892947 aaagaaaacacaaaaaactatactctaaattcttatgttt 24892986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 31734221 - 31734255
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattctta 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  31734221 aaagaaaacacaaaaaactatactccaaattctta 31734255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 28348716 - 28348756
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||| ||| |||||||||||||||||||||    
T  28348716 aaagaaaatacaaaatactatactccaaattcttatgtttt 28348756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34158344 - 34158304
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  34158344 aaagaaaacacaacaaactatactccagattcttatgtttt 34158304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6191153 - 6191193
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  6191153 aaagaaaacacaaaaaactatactccaaattcttatgtttt 6191193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 19912821 - 19912781
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19912821 aaagaaaacacaaaaaactatactccaaattcttatgtttt 19912781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 46760309 - 46760269
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  46760309 aaagaaaacacaaaaaactatactccaaattcttatgtttt 46760269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 12632396 - 12632356
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  12632396 aaagaaaacataaaaaactatactccaaattcttatgtttt 12632356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 14805977 - 14806017
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  14805977 aaagaaaatacaaaaaactatactccaaattcttatgtttt 14806017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 15252971 - 15253011
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  15252971 aaagaaaatacaaaaaactatactccaaattcttatgtttt 15253011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 18102638 - 18102678
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  18102638 aaagaaaacacaaaaaattatactccaaattcttatgtttt 18102678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 20123732 - 20123692
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  20123732 aaagaatacacaaaaaactatactccaaattcttatgtttt 20123692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 45486063 - 45486103
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  45486063 aaagaaaacacaaaaaactatactccaaatttttatgtttt 45486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 14574673 - 14574712
Alignment:
Q  189 aagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  14574673 aagaaaacacaaaaaactatactccaaattcttatatttt 14574712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 37767071 - 37767031
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  37767071 aaagaaaacacaaaaaactatactccaaattatcatgtttt 37767031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 11082298 - 11082258
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  11082298 aaagaaaacacaaaaaactatactccaaattcttatgtttt 11082258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21542526 - 21542566
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  21542526 aaagaaaacacaaaaaactatactccaaattcttatgtttt 21542566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 35129107 - 35129067
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  35129107 aaagaaaacacaaaaaactatactccaaattcttatgtttt 35129067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 17751797 - 17751757
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  17751797 aaagaaaacacaaaaaactatactccaaattcttatatttt 17751757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 34177694 - 34177654
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  34177694 aaagaaaacacaaaaaactatattccaaattcttatgtttt 34177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 3095773 - 3095737
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatg 224  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  3095773 aaagaaaacacaaaaaactatactccaaatttttatg 3095737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6686493 - 6686533
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  6686493 aaagaaaacacaaaaaactatactccaaattcttatgtttt 6686533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 42273755 - 42273795
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42273755 aaagaaaacacaaaaaactatactccaaattcttatgtttt 42273795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 43590015 - 43589975
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  43590015 aaagaaaacacaaaaaactatactccaaattcttatgtttt 43589975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 12729937 - 12729897
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  12729937 aaagaaaacacaaaaaactatactccaatttcttatgtttt 12729897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 12792839 - 12792799
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  12792839 aaagaaaacacaaaaaactatactccaatttcttatgtttt 12792799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 20039210 - 20039250
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  20039210 aaagaaaacacaaaaaattatactccaaattcttatgtttt 20039250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 20644122 - 20644162
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  20644122 aaagaaaacacaaaaaattatactccaaattcttatgtttt 20644162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 32019929 - 32019969
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  32019929 aaagaaaacacagaaaactatactccaaattcttatgtttt 32019969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 34425438 - 34425478
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  34425438 aaagaaaacacaaaaaactatacttcaaattcttatgtttt 34425478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 37522638 - 37522602
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37522638 aaaacacaaaaaactatactccaaattcttatgtttt 37522602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 37562810 - 37562774
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37562810 aaaacacaaaaaactatactccaaattcttatgtttt 37562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 23233519 - 23233559
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||  ||||||||||||||||    
T  23233519 aaagaaaacacaaaaaactatacgtcaaattcttatgtttt 23233559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 2229353 - 2229393
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  2229353 aaagaaaacacaaaaaactatactccaaattcttatgtttt 2229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 4058821 - 4058861
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  4058821 aaagaaaacacaaaaaactatactccaaattcttatgtttt 4058861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 20281697 - 20281737
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  20281697 aaagaaaacacaaaaaactatactccaaattcttatgtttt 20281737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 39078262 - 39078302
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  39078262 aaagaaaacacaaaaaactatactccaaattcttatgtttt 39078302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 47867985 - 47868025
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  47867985 aaagaaaacacaaaaaactatactccaaattcttatgtttt 47868025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 7654723 - 7654763
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  7654723 aaagaaaacacaaaaaactatactccaaatttttatgtttt 7654763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 12002675 - 12002639
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  12002675 aaaacacaaaaaactatactccaaattcttatgtttt 12002639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 16473854 - 16473894
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  16473854 aaagaaaacacaaaaaactatactccaaattcttatatttt 16473894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 16604892 - 16604852
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  16604892 aaagaaaacacaaaaaactatactctaaattcttatgtttt 16604852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 26916431 - 26916471
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  26916431 aaagaaaacacaaaaaaccatactccaaattcttatgtttt 26916471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 29203612 - 29203652
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  29203612 aaagaaaacacaaaaaattatactccaaattcttatgtttt 29203652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 32280049 - 32280009
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  32280049 aaagaaaacacaaaaaattatactccaaattcttatgtttt 32280009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 41414657 - 41414617
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  41414657 aaagaaaacacaaaaaactatactccatattcttatgtttt 41414617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 55580776 - 55580815
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgttt 227  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  55580776 aaagaaaacaaaaaaaactatactccaaattcttatgttt 55580815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 14332866 - 14332906
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  14332866 aaagaaaacacaaaaaaccatattccaaattcttatgtttt 14332906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 24940471 - 24940511
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| ||||||||||||||| |||||    
T  24940471 aaagaaaatacaaaaaactatactccaaattcttacgtttt 24940511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28669047 - 28669007
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||  |||||||||||||||    
T  28669047 aaagaaaacacaaaaaactatactttaaattcttatgtttt 28669007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 35310788 - 35310748
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| | || ||||||||||||||||    
T  35310788 aaagaaaacacaaaaaactatgctacaaattcttatgtttt 35310748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 50080502 - 50080462
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  50080502 aaagaaaacacaaaaaattatactcaaaattcttatgtttt 50080462  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 56318116 - 56318076
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||  ||||| |||||||||||||||    
T  56318116 aaagaaaacacaaaaaaccatactctaaattcttatgtttt 56318076  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 30189683 - 30189723
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  30189683 aaagaaaacacaaaaaactatactccaaattcttatgtttt 30189723  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 53270347 - 53270386
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgttt 227  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  53270347 aaagaaaacacaaaaaactatactccaaattcttatgttt 53270386  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 11054323 - 11054283
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  11054323 aaagaaaacacaaaaaactatactccaaattcttatatttt 11054283  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 14752220 - 14752180
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  14752220 aaagaaaacacaaaaaattatactccaaattcttatgtttt 14752180  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 35963268 - 35963304
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35963268 aaaacacaaaaaactatactccaaattcttatgtttt 35963304  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 41476348 - 41476308
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  41476348 aaagaaaacacaaaaaactatactccaaatttttatgtttt 41476308  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 46711670 - 46711630
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  46711670 aaagaaaacacaaaaaattatactccaaattcttatgtttt 46711630  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 6438195 - 6438229
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattctta 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  6438195 aaagaaaacacaaaaaactatactccaaattctta 6438229  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 37042426 - 37042389
Alignment:
Q  191 gaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  37042426 gaaaacacaaaaaactatactccaaatttttatgtttt 37042389  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 9264663 - 9264703
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||| |||||| ||||||||    
T  9264663 aaagaaaacacaaaaaactatactcaaaattcatatgtttt 9264703  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 23910525 - 23910485
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  23910525 aaagaaaacacaaaaagctatactctaaattcttatgtttt 23910485  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 26208130 - 26208166
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  26208130 aaaacacaaaaaactatactctaaattcttatgtttt 26208166  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 29235299 - 29235339
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| ||||| |||||||||||||||    
T  29235299 aaagaaaatacaaaaaactatactctaaattcttatgtttt 29235339  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 31837031 - 31837071
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| |||||||| ||||||||||||    
T  31837031 aaagaaaatacaaaaaactatactccaacttcttatgtttt 31837071  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 37075072 - 37075112
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||| ||||||||||||||||    
T  37075072 aaagaaaacacaaaaaattatacttcaaattcttatgtttt 37075112  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 50651049 - 50651009
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  50651049 aaagaaaacacaaaaaactatatttcaaattcttatgtttt 50651009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 54464908 - 54464868
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | |||| ||||||||||||||||    
T  54464908 aaagaaaacacaaaaaattatacttcaaattcttatgtttt 54464868  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28599200 - 28599160
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  28599200 aaagaaaacacaaaaaactatactccaaattcttatgtttt 28599160  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 35517231 - 35517271
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  35517231 aaagaaaacacaaaaaactatactccaaattcttatgtttt 35517271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 12938350 - 12938390
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  12938350 aaagaaagcacaaaaaactatactccaaattcttatgtttt 12938390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 35115851 - 35115815
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35115851 aaaacacaaaaaactatactccaaattcttatgtttt 35115815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 41528364 - 41528404
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  41528364 aaagaaaacacaaaaaactatacttcaaattcttatgtttt 41528404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 45085365 - 45085405
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  45085365 aaagaaaatacaaaaaactatactccaaattcttatgtttt 45085405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 6110250 - 6110211
Alignment:
Q  189 aagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  6110250 aagaaaacacaaaaagctatactccaaattcttatgtttt 6110211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 9864771 - 9864730
Alignment:
Q  188 aaagaaaacacaaaaaa-ctttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  9864771 aaagaaaacacaaaaaaactatactccaaattcttatgtttt 9864730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 3201434 - 3201474
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||  |||||||||||||||    
T  3201434 aaagaaaacacaaaaaactatactttaaattcttatgtttt 3201474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 11617132 - 11617172
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  11617132 aaagaaaataccaaaaactatactccaaattcttatgtttt 11617172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 19264208 - 19264248
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  19264208 aaagaaaacacaaaaaattatactctaaattcttatgtttt 19264248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 35023010 - 35023046
Alignment:
Q  192 aaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||| | |||||||||||||||||||||    
T  35023010 aaaacacaaaaaattatactccaaattcttatgtttt 35023046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 626 - 586
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  626 aaagaaaacacataaaactatactccaaattcttatgtttt 586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 78065 - 78105
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||||| ||||| |||||||||||||||    
T  78065 aaagaaaacacaaaaaactatactctaaattcttatgtttt 78105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0774 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 3481 - 3447
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattctta 222  Q
    ||||||||||||||||||| |||||||||||||||    
T  3481 aaagaaaacacaaaaaactatactccaaattctta 3447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 10153 - 10193
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    |||||||||||||||||||  | ||||||||||||||||||    
T  10153 aaagaaaacacaaaaaactacattccaaattcttatgtttt 10193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 44824 - 44784
Alignment:
Q  188 aaagaaaacacaaaaaactttactccaaattcttatgtttt 228  Q
    ||||||||||||||||| | ||||||||||| |||||||||    
T  44824 aaagaaaacacaaaaaaatatactccaaattattatgtttt 44784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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