View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10273_low_88 (Length: 209)
Name: NF10273_low_88
Description: NF10273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10273_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 29774497 - 29774672
Alignment:
| Q |
18 |
cagatgaaagtgtagttc----cttaaccacaacctcaatgatgattgaccaacattcatcggcttctactttgaactgctcttaaaagcatgcatgagt |
113 |
Q |
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| T |
29774497 |
cagatgaaagtgtagttctttaattaaccacgacctcaatgatgattgaccagcattcatcggcttctactttgaactgctcttaaaagcatgcacgagt |
29774596 |
T |
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| Q |
114 |
agcctccatataacgacactttcatctaaatcgttcgatcaacacttatgcaattttcaaataagtttattctcat |
189 |
Q |
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| T |
29774597 |
agcctccatataacgacactttcatctaaatcgtacgatcaacacttatgcaatttttaaattagtttattttcat |
29774672 |
T |
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Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 29771403 - 29771547
Alignment:
| Q |
37 |
ttaaccacaacctcaatgatgattgaccaacattcatcggcttctactttgaactgctcttaaaagcatgcatgagtagcctccatataacgacactttc |
136 |
Q |
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||||||||||||||||||||| |||||||||| |||| ||| ||||||| | ||||||||||||||||||| |||||| |||||||||| ||||||||| |
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| T |
29771403 |
ttaaccacaacctcaatgatggttgaccaacacccatcagctactacttttatctgctcttaaaagcatgcacgagtagtctccatataaagacactttc |
29771502 |
T |
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| Q |
137 |
atctaaatcgttcgatcaacacttatgcaattttcaaataagttt |
181 |
Q |
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| T |
29771503 |
aactaaattgtacgatcaacacttgtgcaattttcaattaagttt |
29771547 |
T |
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