View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_1 (Length: 512)
Name: NF10274_high_1
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_1 |
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| [»] chr4 (3 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 370 - 512
Target Start/End: Complemental strand, 19603115 - 19602972
Alignment:
| Q |
370 |
cctaattattc-caaagataaattctaccaattatctcgtcgaaatatcaacaatttccgacgacggtgccgaaaaattgatgaaaaatttaggcatgtg |
468 |
Q |
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| T |
19603115 |
cctaattattcacaaagataaattctaccaattacctcgtcaaaatatcaacaatttccgacaacggcgccgaaaaattgatgaaaaatttaggcaagtg |
19603016 |
T |
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| Q |
469 |
catcaaatggtacaaagtaataaagcactaagttaatcgtctcc |
512 |
Q |
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| T |
19603015 |
catcaaatagtaccaagtaataaagcagtaagttaatcgtctcc |
19602972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 19603244 - 19603146
Alignment:
| Q |
167 |
cctaaactatttctaaaagataaacctaaactagaatgtaggatctaaccctaatctatactaggaattaggatctaatcctaatttataggatcgaac |
265 |
Q |
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| T |
19603244 |
cctaaactatttctaaaagataaacctaaactagaatgtaggatctaaccctaatttatactaggaattaggatctaatcctaatttataggatcgaac |
19603146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 18446788 - 18446706
Alignment:
| Q |
370 |
cctaattattccaaagataaattctaccaattatctcgtcgaaatatcaacaatttccgacgacggtgccgaaaaattgatga |
452 |
Q |
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| T |
18446788 |
cctaattgttcaaaaaataaattctactgattaccttgtcgaaatattaacaatctccgacaaccgcgccgaaaacttgatga |
18446706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 25664721 - 25664781
Alignment:
| Q |
363 |
aacctaacctaattattccaaagataaattctaccaattatctcgtcgaaatatcaacaat |
423 |
Q |
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| T |
25664721 |
aacctaagctaattattcacaaaataaattctaccgattaccttgtcgaaatatcaacaat |
25664781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 13818 - 13767
Alignment:
| Q |
170 |
aaactatttctaaaagataaacctaaactagaatgtaggatctaaccctaat |
221 |
Q |
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| T |
13818 |
aaactaatcctaaaagataaacctaaactagaaactaggaactaaccctaat |
13767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 508
Target Start/End: Original strand, 8713724 - 8713870
Alignment:
| Q |
363 |
aacctaacctaattattc-caaagataaattctaccaattatctcgtcgaaatatcaacaatttccgacgacggtgccgaaaaattgatgaaaaatttag |
461 |
Q |
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| T |
8713724 |
aacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaacatgatggaaaatttag |
8713823 |
T |
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| Q |
462 |
gcatgtgcatcaaatggtacaaagtaataaagcactaagttaatcgt |
508 |
Q |
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| T |
8713824 |
gaaagtatacaaaatcataccaagtaataaagtagtaagttaatcgt |
8713870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 508
Target Start/End: Original strand, 9065611 - 9065757
Alignment:
| Q |
363 |
aacctaacctaattattc-caaagataaattctaccaattatctcgtcgaaatatcaacaatttccgacgacggtgccgaaaaattgatgaaaaatttag |
461 |
Q |
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| T |
9065611 |
aacctaacctaattactcacaaaaataaattctaccgattaccttgtcgtaatatcaacaatccccgacaatgacgccaaaaacatgatggaaaatttag |
9065710 |
T |
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| Q |
462 |
gcatgtgcatcaaatggtacaaagtaataaagcactaagttaatcgt |
508 |
Q |
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| T |
9065711 |
gaaagtatacaaaatcataccaagtaataaagtagtaagttaatcgt |
9065757 |
T |
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