View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_15 (Length: 306)
Name: NF10274_high_15
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 24985771 - 24986049
Alignment:
| Q |
18 |
aggacctttggaaaaatcgcactaatctcaagtttcttcactcctacccagacaaaagtcctaccttctgcaaatttgtgtcccagattctgtcttgtcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985771 |
aggacctttggaaaaatcgcactaatctcaagtttcttcactcctacccagacaaaagtcctaccttctgcaaatttgtgtcccagattctgtcttgtcg |
24985870 |
T |
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| Q |
118 |
tgacacctctattccacttcatagcgtacattttgagcatgtaggtcacgttaatccccctaaaactactctcctggaggtcatgaaatatgcggtgtcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985871 |
tgacacctctattccacttcatagcgtacattttgagcatgtaggtcacgttaatccccctaaaactactctcctggaggtcatgaaatatgcggtgtct |
24985970 |
T |
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| Q |
218 |
cataatgtgcagcaactcacggtcaatgctgaagtaaagtacctaagggatcttgagttatccccctacattttttctt |
296 |
Q |
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| T |
24985971 |
cataatgtgcagcaactcacggtcaatgctgaagtaaagtacctaagggatcttgagttatccccctacattttttctt |
24986049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 23273541 - 23273313
Alignment:
| Q |
21 |
acctttggaaaaatcgcactaatctcaagtttcttcactcctacccagacaaaagtcctaccttctgcaaatttgtgtcccagattctgtcttgtcgtga |
120 |
Q |
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| T |
23273541 |
acctttggaaacatctcactaatctaaagttgcatcactcctaccctgacaatagtgaaatctttttcaaattcgtgtcccagattttgagtggtcgcaa |
23273442 |
T |
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| Q |
121 |
cacctctattccacttcatagcgtacattttgagcatgtaggtcacgttaatccccctaaaactactctcctggaggtcatgaaatatgcgg---tgtcc |
217 |
Q |
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| T |
23273441 |
tgactctatttcccttcatagcctagattttgagcacgaggatcacgtagatccccctaaaactacactcctagaggtcatgagatatgctgcatcgtca |
23273342 |
T |
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| Q |
218 |
cataatgtgcagcaactcacggtcaatgc |
246 |
Q |
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| T |
23273341 |
cataatatgcagcaactcacagtctatgc |
23273313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 23410718 - 23410856
Alignment:
| Q |
18 |
aggacctttggaaaaatcgcactaatctcaagtttcttcactcctacccagacaaaagtcctaccttctgcaaatttgtgtcccagattctgtcttgtcg |
117 |
Q |
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|||||||||||||| ||| ||| ||||| ||||| | ||| |||||||| ||||| ||| || |||||||||||||||||||||||| ||||| |||| |
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| T |
23410718 |
aggacctttggaaacatctcaccaatctaaagttccatcattcctaccctgacaatagtgatatgttctgcaaatttgtgtcccagattttgtctggtcg |
23410817 |
T |
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| Q |
118 |
tgacacctctattccacttcatagcgtacattttgagca |
156 |
Q |
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|| || |||||| ||||||||| || |||||||||| |
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| T |
23410818 |
caaccactatattccccttcatagcctagattttgagca |
23410856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 34800330 - 34800282
Alignment:
| Q |
194 |
gaggtcatgaaatatgcggtgtcccataatgtgcagcaactcacggtca |
242 |
Q |
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||||||||| ||||||| | ||| ||||||||||| ||||||||||||| |
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| T |
34800330 |
gaggtcatggaatatgctgcgtcacataatgtgcaacaactcacggtca |
34800282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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