View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_20 (Length: 250)
Name: NF10274_high_20
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30166500 - 30166270
Alignment:
| Q |
1 |
tatgagttagcagcagtagatttccgataggaaaacctcaatacattaatatatgatcaacgtgtaatgaagccaatgtatgtacgttttagccaaggga |
100 |
Q |
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| T |
30166500 |
tatgagttagcagcagtagatttccgataggaaaacctcaatacattaatatatgatcaacgtgtaatgaagccaatgtatgtacgttttagccaaggga |
30166401 |
T |
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| Q |
101 |
tcacgcactaagcagtgcaaagggtagattgtttggtgcactgtagcaggtaagcatgactaaaaaagatgataaagaggggagcaggaggaggtcccca |
200 |
Q |
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| T |
30166400 |
tcacgcactaagcagtgcaaagggtagattgtttggtgcactgtagcaggtaagcatgactaaaaaagatgataaagacgggagcaggaggaggtcccca |
30166301 |
T |
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| Q |
201 |
atggttgttgttggaaattccgccttaattg |
231 |
Q |
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| T |
30166300 |
atggttgttgttggaaattccgccttaattg |
30166270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 30005813 - 30005638
Alignment:
| Q |
1 |
tatgagttagcagcagtagatttccgataggaaaacctcaatacattaatatatgatcaacgtgtaatgaagccaatgtatgtacgttttagccaaggga |
100 |
Q |
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| T |
30005813 |
tatgggttagcagcagtaggttttagataagaa--cctcaatccattaatagatgatcaacgtgtaatgaaacctat------acattttagccacggga |
30005722 |
T |
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| Q |
101 |
tcacgcactaagcagtgcaaagggtagattgtttggtgcactgtagcaggtaagcatgactaaaaaagatgataaagaggggag |
184 |
Q |
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| T |
30005721 |
tcacgtaccaggcagtgcaaagggaagattgttcgacgtactatagcaggtaagcatgactaaagatgaagataaagaggggag |
30005638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 30062486 - 30062342
Alignment:
| Q |
34 |
aacctcaatacattaatatatgatcaacgtgtaatgaagccaatgtatgtacgttttagccaagggatcacgcactaagcagtgcaaagggtagattgtt |
133 |
Q |
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| T |
30062486 |
aacctcaatccattaatagatgatcaatgtgtaatgaaacctat------acattttagccacgggatcacgtaccaggcagtgcaaagggaagattgtt |
30062393 |
T |
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| Q |
134 |
tggtgcactgtagcaggtaagcatgactaaaaaagatgataaagaggggag |
184 |
Q |
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| T |
30062392 |
cgacgcactatagcaggtatgcatgactaaaaatgaagataatgaggggag |
30062342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 30246769 - 30246726
Alignment:
| Q |
155 |
catgactaaaaaagatgataaagaggggagcaggaggaggtccc |
198 |
Q |
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| T |
30246769 |
catgactaaaaaagatgataaagagggaagcaggaggaagtccc |
30246726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 45227367 - 45227339
Alignment:
| Q |
205 |
ttgttgttggaaattccgccttaattgcg |
233 |
Q |
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| T |
45227367 |
ttgttgttggaaattccgccttaattgcg |
45227339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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