View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10274_high_26 (Length: 236)
Name: NF10274_high_26
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 42724757 - 42724961
Alignment:
| Q |
7 |
agaagcataggtagcttggaatttctattgatttgtatcttgcaaactatgattgtgtttcaaatcaacacagcaaattattgattccctcttctcattc |
106 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
42724757 |
agaagcatatgtagcttggaatttgtattgatttgtatcttgaaaactatgattgtgtttcaaattaacacagtaaattattgattccctcttctcattc |
42724856 |
T |
|
| Q |
107 |
atttacaaaatcactttccgtttccggtgccgtgactgttcggcggcgggaggcggcggtttttgttgagaacttatgaagatgagtcaaaggaacgagt |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42724857 |
atttacaaaattactttccgtttccggtgccgtgactgttc----------ggcggcggtttttgttgagaacttatgaagatgagtaaaaggaacgagt |
42724946 |
T |
|
| Q |
207 |
gggccgagttcacta |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42724947 |
gggccgagttcacta |
42724961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 11313883 - 11314087
Alignment:
| Q |
7 |
agaagcataggtagcttggaatttctattgatttgtatcttgcaaactatgattgtgtttcaaatcaacacagcaaattattgattccctcttctcattc |
106 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
11313883 |
agaagcatatgtagcttgaaatttgtattgatttgtatcttgaaaactatgattgtgtttcaaattaacacagaaaattattgattccctcttctcattc |
11313982 |
T |
|
| Q |
107 |
atttacaaaatcactttccgtttccggtgccgtgactgttcggcggcgggaggcggcggtttttgttgagaacttatgaagatgagtcaaaggaacgagt |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11313983 |
atttacaaaataactttccgtttccggtgccgtgactgttc----------ggcggcggtttttgttgagaacttatgaagatgagtaaaaggaacgagt |
11314072 |
T |
|
| Q |
207 |
gggccgagttcacta |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11314073 |
gggccgagttcacta |
11314087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 8234530 - 8234326
Alignment:
| Q |
7 |
agaagcataggtagcttggaatttctattgatttgtatcttgcaaactatgattgtgtttcaaatcaacacagcaaattattgattccctcttctcattc |
106 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||| || |||||| |
|
|
| T |
8234530 |
agaagcatatgtagcttgaaatttgtattgatttgtatcttgaaaactatgattgtgtttcaaattaacactgtaaattattgattcccttttttcattc |
8234431 |
T |
|
| Q |
107 |
atttacaaaatcactttccgtttccggtgccgtgactgttcggcggcgggaggcggcggtttttgttgagaacttatgaagatgagtcaaaggaacgagt |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8234430 |
atttacaaaattactttccgtttccggtgccgtgactgttcggcg----------gcggtttttgttgagaacttatgaagatgagtaaaaggaacgagt |
8234341 |
T |
|
| Q |
207 |
gggccgagttcacta |
221 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8234340 |
gggccgagttcacta |
8234326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University