View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_27 (Length: 233)
Name: NF10274_high_27
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 5221223 - 5221361
Alignment:
| Q |
73 |
cacaaaaacctcaatacaaacatctataaataatgcacagcacaagcac------atgtcatgcacaccagaacttgatcataaagtgagtagaacaata |
166 |
Q |
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| T |
5221223 |
cacaaaaacctcaatacaaacatctataaataatgcacagcacaagcaccatttgatatcatgcacaccagaacttgatcataaagtgggtggaacaata |
5221322 |
T |
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| Q |
167 |
aattcgagtctaaaaatcaacttcaaacatcagaacatc |
205 |
Q |
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| T |
5221323 |
aattcgagactaaaaattaacttcaaacatcagaacatc |
5221361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 5221137 - 5221192
Alignment:
| Q |
12 |
agcacagacatctataaatagtattctctaagaaccttaaactccatcaatccaaa |
67 |
Q |
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| T |
5221137 |
agcacaaacatctataaatagtattctctaagaaccttaaactccatcaatccaaa |
5221192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 4243468 - 4243431
Alignment:
| Q |
149 |
aaagtgagtagaacaataaattcgagtctaaaaatcaa |
186 |
Q |
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| T |
4243468 |
aaagtgagtagaacaataaatttgagtgtaaaaatcaa |
4243431 |
T |
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