View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10274_high_28 (Length: 230)
Name: NF10274_high_28
Description: NF10274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10274_high_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 40722820 - 40722596
Alignment:
| Q |
7 |
cctacctctccaaaaataaaagtataaaatgatcctagtagtgagaactcgtattttggttctcagtagtgcaatcaaaagcatataagtgagtcttttt |
106 |
Q |
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| T |
40722820 |
cctacctctccaaaaataaaagtttaaaatgatcgtagtagtgagaactcgtattttggttctcagtagtgcaatcaaaagcatataagtgagtcttttt |
40722721 |
T |
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| Q |
107 |
tatcaaatcaaatgtcaacaacatttaagagttggaatgatgtagggtagtattttgtacatatcgagtatttaatttgtccaaat-cccgcaaatataa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
40722720 |
tatcaaatcaaatgtcaacaacatttaagagttggaatgatgtagggtagtattttgtacatatcgagtatttaatttgtccaaatccccgcaaatctaa |
40722621 |
T |
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| Q |
206 |
gcaaaattatcaaactcaccatttt |
230 |
Q |
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||||||||||||||||||||||||| |
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| T |
40722620 |
gcaaaattatcaaactcaccatttt |
40722596 |
T |
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